2002-October Archives by Author

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Starting: Tue Oct 1 04:14:44 2002
Ending: Thu Oct 31 23:40:33 2002
Messages: 381

• [Bioperl-l] tr/// and eval   simon andrews (BI)
• [Bioperl-l] extracting coordinates from EMBL join annotation   Zayed Albertyn
• [Bioperl-l] AuthorZone.Com   AuthorZone.Com
• [Bioperl-l] Re: installing downloaded BioPerl Bundle locally in a linux farm   BHurwitz@twt.com
• [Bioperl-l] post-processing of seqs   BHurwitz@twt.com
• [Bioperl-l] StandAloneBlast   BHurwitz@twt.com
• [Bioperl-l] 65% speedup for Bio::SeqIO::fasta::next_seq test   Ewan Birney
• [Bioperl-l] Re: [BioSQL-l] seqfeature.display_id   Ewan Birney
• [Bioperl-l] swissprot is a pain - partly due to bioperl   Ewan Birney
• [Bioperl-l] heads up for 1.1.1   Ewan Birney
• [Bioperl-l] cvs commit info msgs   Ewan Birney
• [Bioperl-l] Re: Bio::Species changes   Ewan Birney
• [Bioperl-l] Re: Bio::Species changes   Ewan Birney
• [Bioperl-l] Structured (nested) Annotation   Ewan Birney
• [Bioperl-l] Structured (nested) Annotation   Ewan Birney
• [Bioperl-l] Structured (nested) Annotation   Ewan Birney
• [Bioperl-l] seqfeature.display_id   Ewan Birney
• [Bioperl-l] 1.1.1 progress   Ewan Birney
• [Bioperl-l] Please test:   Ewan Birney
• [Bioperl-l] 1.1.1 progress   Ewan Birney
• [Bioperl-l] Please test   Ewan Birney
• [Bioperl-l] sequence filtering   Ewan Birney
• [Bioperl-l] sequence filtering   Ewan Birney
• [Bioperl-l] Windows whines... any thoughts?   Ewan Birney
• [Bioperl-l] Please test   Ewan Birney
• [Bioperl-l] HMMER   Ewan Birney
• [Bioperl-l] Please test   Ewan Birney
• [Bioperl-l] PrimarySeq::length   Ewan Birney
• [Bioperl-l] PrimarySeq::length   Ewan Birney
• [Bioperl-l] 1.1.1 this weekend - and I mean it!   Ewan Birney
• [Bioperl-l] make test on perl 5.8   Ewan Birney
• [Bioperl-l] make test on perl 5.8   Ewan Birney
• [Bioperl-l] est2genome   Ewan Birney
• [Bioperl-l] AnyDBM_File   Ewan Birney
• [Bioperl-l] ...One more time...   Ewan Birney
• [Bioperl-l] 'make test' results for bioperl-live on Solaris 8 w/ perl 5.6.1 and few dependencies   Ewan Birney
• [Bioperl-l] Announcing Developer's release 1.1.1   Ewan Birney
• [Bioperl-l] Proposed route to 1.2   Ewan Birney
• [Bioperl-l] Proposed route to 1.2   Ewan Birney
• [Bioperl-l] Proposed route to 1.2   Ewan Birney
• [Bioperl-l] Re: MicroarrayIO proposal   Ewan Birney
• [Bioperl-l] SearchIO failing test 203   Ewan Birney
• [Bioperl-l] SearchIO failing test 203   Ewan Birney
• [Bioperl-l] IO::String   Ewan Birney
• [Bioperl-l] SeqIO embl parser bug?   Ewan Birney
• [Bioperl-l] feature additional tag order in GFF   Ewan Birney
• [Bioperl-l] Behavior of Bio::Species object   Ewan Birney
• [Bioperl-l] getting database hit sequences   Ewan Birney
• [Bioperl-l] getting database hit sequences - from BLAST databases   Ewan Birney
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Ewan Birney
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Ewan Birney
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Ewan Birney
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Ewan Birney
• [Bioperl-l] bioperl dna pairwise local alignment   Ewan Birney
• FW: [Bioperl-l] Bio::Cluster   Ewan Birney
• [Bioperl-l] AnnotatableI   Ewan Birney
• [Bioperl-l] GenericHSP methods   Paul Boutros
• [Bioperl-l] GenericHSP methods   Paul Boutros
• [Bioperl-l] GenericHSP methods   Paul Boutros
• [Bioperl-l] Re: Please test   Paul Boutros
• [Bioperl-l] Re: Windows whines... any thoughts   Paul Boutros
• [Bioperl-l] Windows whines... any thoughts?   Tim Bunce
• [Bioperl-l] MicroarrayIO proposal   Chervitz, Steve
• [Bioperl-l] Re: MicroarrayIO proposal   Chervitz, Steve
• [Bioperl-l] SeqIO/scf.pm bug (with fix)   Tony Cox
• [Bioperl-l] 'make test' results for bioperl-live on Solaris 8 w/ perl 5.6.1 and few dependencies   Chris Dagdigian
• [Bioperl-l] Re: Regarding the Bioperl-db you installed..   Chris Dagdigian
• [Bioperl-l] parameter/method naming conventions   Allen Day
• [Bioperl-l] Bio::Root::IO::_readline   Allen Day
• [Bioperl-l] bioperl cvs   Allen Day
• [Bioperl-l] Bio::Root::IO::_readline   Allen Day
• [Bioperl-l] Bio::Root::IO::_readline   Allen Day
• [Bioperl-l] MicroarrayIO proposal   Allen Day
• [Bioperl-l] MicroarrayIO proposal   Allen Day
• [Bioperl-l] MicroarrayIO proposal   Allen Day
• [Bioperl-l] Proposed route to 1.2   Allen Day
• [Bioperl-l] Re: MicroarrayIO proposal   Allen Day
• [Bioperl-l] new Bio::Root::IO functionality   Allen Day
• [Bioperl-l] Help with manipulating quality objects PLUS write_seq(args)   Brian Desany
• [Bioperl-l] Help with manipulating quality objects PLUS write_seq(args)   Brian Desany
• [Bioperl-l] Help with manipulating quality objects PLUS write_seq(args)   Brian Desany
• [Bioperl-l] Help with manipulating quality objects PLUS write_seq(args)   Brian Desany
• [Bioperl-l] Help with manipulating quality objects PLUS write_seq(args)   Brian Desany
• [Bioperl-l] Bio::DB::GFF::Adaptor::dbi.pm schema creation   Brian Desany
• [Bioperl-l] Seq Object   Scott Doniger
• [Bioperl-l] (no subject)   Jonathan Epstein
• [Bioperl-l] Genome Research Paper   Donald Roy Forsdyke
• [Bioperl-l] Parsing join(x1..x2,x3..x4)!   Johan Geijer
• [Bioperl-l] SeqIO embl parser bug?   Sam Griffiths-Jones
• [Bioperl-l] rev translating stop codons with Bio::Tools::CodonTable   Jamie Hatfield
• [Bioperl-l] EST Alignment questions   Jamie Hatfield
• [Bioperl-l] Appending blast results for multi sequence data set.   Charles Hauser
• [Bioperl-l] Annotation Pipeline   Charles Hauser
• [Bioperl-l] make test on perl 5.8   Tim Henderson
• [Bioperl-l] ...One more time...   Tim Henderson
• [Bioperl-l] make test on perl 5.8   Tim Henderson
• [Bioperl-l] Re: [BioSQL-l] Re: Regarding the Bioperl-db you installed..   Tim Henderson
• [Bioperl-l] Excel access   Naran Hirani
• [Bioperl-l] Excel access   Naran Hirani
• [Bioperl-l] unsupported close() in SeqIO   T.D. Houfek
• [Bioperl-l] Problem make-ing, arg list too long   David A. Jewell
• [Bioperl-l] cvs commit info msgs   Lars G. T. Jorgensen
• [Bioperl-l] AutoDia   Lars G. T. Jorgensen
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Lars G. T. Jorgensen
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Lars G. T. Jorgensen
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Lars G. T. Jorgensen
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Lars G. T. Jorgensen
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Lars G. T. Jorgensen
• [Bioperl-l] SwissProt SQ Line   Jonathan B Joseph
• [Bioperl-l] Bio::Graphics & Binding Sites visualization   Tommy Kaplan
• [Bioperl-l] Bio::Graphics & Binding Sites visualization   Tommy Kaplan
• FW: [Bioperl-l] tr/// and eval   John Kloss
• [Bioperl-l] getting database hit sequences - from BLAST databases   Ian Korf
• [Bioperl-l] taxonomic information handler   Dan Kortschak
• [Bioperl-l] Re: questions and freeze   Dan Kortschak
• Bio::Taxon/Bio::Taxonomy was:Re: [Bioperl-l] Re: Fwd: questions and freeze (fwd)   Dan Kortschak
• [Bioperl-l] A survey about handling bugs in open source projects   Gunes Koru
• [Bioperl-l] Bug handling survey - Tree based models   Gunes Koru
• [Bioperl-l] Re: [BioSQL-l] seqfeature.display_id   Hilmar Lapp
• [Bioperl-l] Re: [BioSQL-l] seqfeature.display_id   Hilmar Lapp
• [Bioperl-l] attribute setting and return value   Hilmar Lapp
• [Bioperl-l] parameter/method naming conventions   Hilmar Lapp
• [Bioperl-l] Q: contributing a UniVec module to BioPerl   Hilmar Lapp
• [Bioperl-l] 65% speedup for Bio::SeqIO::fasta::next_seq test   Hilmar Lapp
• [Bioperl-l] est2genome and bioperl   Hilmar Lapp
• [Bioperl-l] Bio::Cluster::Family   Hilmar Lapp
• [Bioperl-l] swissprot is a pain - partly due to bioperl   Hilmar Lapp
• [Bioperl-l] $seq->primary_id for swissprot entries   Hilmar Lapp
• [Bioperl-l] Bio::Species changes   Hilmar Lapp
• [Bioperl-l] Structured (nested) Annotation   Hilmar Lapp
• [Bioperl-l] Re: Bio::Species changes   Hilmar Lapp
• [Bioperl-l] Structured (nested) Annotation   Hilmar Lapp
• [Bioperl-l] Structured (nested) Annotation   Hilmar Lapp
• [Bioperl-l] bioperl cvs   Hilmar Lapp
• [Bioperl-l] Bio::Root::IO::_readline   Hilmar Lapp
• [Bioperl-l] seqfeature.display_id   Hilmar Lapp
• [Bioperl-l] Re: [BioSQL-l] seqfeature.display_id   Hilmar Lapp
• [Bioperl-l] 1.1.1 progress   Hilmar Lapp
• [Bioperl-l] loading up swissprot into bioperl-db   Hilmar Lapp
• [Bioperl-l] sequence filtering   Hilmar Lapp
• [Bioperl-l] sequence filtering   Hilmar Lapp
• [Bioperl-l] sequence filtering   Hilmar Lapp
• [Bioperl-l] RE: [BioSQL-l] GBrowse on BioSQL dead in water again   Hilmar Lapp
• [Bioperl-l] FW: Warning: could not send message   Hilmar Lapp
• [Bioperl-l] sequence filtering   Hilmar Lapp
• [Bioperl-l] RE: [BioSQL-l] GBrowse on BioSQL dead in water again   Hilmar Lapp
• [Bioperl-l] Please test   Hilmar Lapp
• [Bioperl-l] Please test   Hilmar Lapp
• [Bioperl-l] Fwd: questions and freeze (fwd)   Hilmar Lapp
• [Bioperl-l] GO parser, GO engine   Hilmar Lapp
• Bio::Taxon/Bio::Taxonomy was:Re: [Bioperl-l] Re: Fwd: questions and freeze (fwd)   Hilmar Lapp
• [Bioperl-l] PrimarySeq::length   Hilmar Lapp
• [Bioperl-l] PrimarySeq::length   Hilmar Lapp
• [Bioperl-l] PrimarySeq::length   Hilmar Lapp
• [Bioperl-l] est2genome   Hilmar Lapp
• [Bioperl-l] naming conventions   Hilmar Lapp
• [Bioperl-l] ...One more time...   Hilmar Lapp
• [Bioperl-l] results of make test on bioperl-live w/ OpenBSD 3.1, Perl 5.6.1 and few dependencies installed   Hilmar Lapp
• [Bioperl-l] Proposed route to 1.2   Hilmar Lapp
• [Bioperl-l] Proposed route to 1.2   Hilmar Lapp
• [Bioperl-l] Start and end of query sequence in HSPs   Hilmar Lapp
• [Bioperl-l] SeqIO embl parser bug?   Hilmar Lapp
• [Bioperl-l] description length   Hilmar Lapp
• [Bioperl-l] Re: chgs to seqfeature::generic   Hilmar Lapp
• [Bioperl-l] Behavior of Bio::Species object   Hilmar Lapp
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Hilmar Lapp
• [Bioperl-l] Help with manipulating quality objects PLUS write_seq(args)   Hilmar Lapp
• [Bioperl-l] is_remote() for location objects   Hilmar Lapp
• [Bioperl-l] post-processing of seqs   Hilmar Lapp
• [Bioperl-l] Parsing join(x1..x2,x3..x4)!   Hilmar Lapp
• [Bioperl-l] Help with manipulating quality objects PLUS write_seq(args)   Hilmar Lapp
• [Bioperl-l] Bio::DB::GFF::Adaptor::dbi.pm schema creation   Hilmar Lapp
• [Bioperl-l] post-processing of seqs   Hilmar Lapp
• [Bioperl-l] Bio::Cluster   Hilmar Lapp
• FW: [Bioperl-l] Bio::Cluster   Hilmar Lapp
• [Bioperl-l] Bio::Cluster   Hilmar Lapp
• [Bioperl-l] Seq Object   Hilmar Lapp
• FW: [Bioperl-l] Bio::Cluster   Hilmar Lapp
• [Bioperl-l] RE: [BioSQL-l] Re: Regarding the Bioperl-db you installed..   Hilmar Lapp
• [Bioperl-l] AnnotatableI   Hilmar Lapp
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1277 (fwd)   Hilmar Lapp
• [Bioperl-l] extracting coordinates from EMBL join annotation   Hilmar Lapp
• [Bioperl-l] locuslink   Hilmar Lapp
• [Bioperl-l] Bug Question   Rich LeDuc
• [Bioperl-l] Help with manipulating quality objects   Rich LeDuc
• [Bioperl-l] Help with manipulating quality objects PLUS write_seq(args)   Rich LeDuc
• [Bioperl-l] parameter/method naming conventions   Heikki Lehvaslaiho
• [Bioperl-l] error using Bio::DB::DBFetch   Heikki Lehvaslaiho
• [Bioperl-l] Re: [BioSQL-l] seqfeature.display_id   Heikki Lehvaslaiho
• [Bioperl-l] fixing personal CVS copies   Heikki Lehvaslaiho
• [Bioperl-l] Please test   Heikki Lehvaslaiho
• [Bioperl-l] CVS Access Problem   Heikki Lehvaslaiho
• [Bioperl-l] tr/// and eval   Heikki Lehvaslaiho
• [Bioperl-l] Re: ask for help!   Heikki Lehvaslaiho
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Heikki Lehvaslaiho
• [Bioperl-l] bioperl dna pairwise local alignment   Heikki Lehvaslaiho
• [Bioperl-l] How to retrieve info about sequence-tagged-sites   Heikki Lehvaslaiho
• [Bioperl-l] How to retrieve info about sequence-tagged-sites   Heikki Lehvaslaiho
• [Bioperl-l] SeqIO/scf.pm bug (with fix)   Heikki Lehvaslaiho
• [Bioperl-l] Coding practice: using a hash as a reference depreciated   Heikki Lehvaslaiho
• [Bioperl-l] rev translating stop codons with Bio::Tools::CodonTable   Heikki Lehvaslaiho
• [Bioperl-l] Make test seems happy   Steven Lembark
• [Bioperl-l] SearchIO failing test 203   Marc Logghe
• [Bioperl-l] How to retrieve info about sequence-tagged-sites   Alice Lu
• [Bioperl-l] How to retrieve info about sequence-tagged-sites   Alice Lu
• [Bioperl-l] How to retrieve info about sequence-tagged-sites   Alice Lu
• [Bioperl-l] 65% speedup for Bio::SeqIO::fasta::next_seq test   Aaron J Mackey
• [Bioperl-l] cvs commit info msgs   Aaron J Mackey
• [Bioperl-l] fixing personal CVS copies   Aaron J Mackey
• [Bioperl-l] make test on perl 5.8   Aaron J Mackey
• [Bioperl-l] about FASTA report parser   Aaron J Mackey
• [Bioperl-l] SearchIO failing test 203   Aaron J Mackey
• [Bioperl-l] SearchIO failing test 203   Aaron J Mackey
• [Bioperl-l] Re: [Bioperl-guts-l] real module issues   Ryan Marsh
• [Bioperl-l] Excel access   Andreas Matern
• [Bioperl-l] Re: Regarding the Bioperl-db you installed..   Damien Mattei
• [Bioperl-l] est2genome   Graham McVicker
• [Bioperl-l] All tests pass Mandrake 8.2/ perl 5.6.1   Richard Meraz
• [Bioperl-l] rev translating stop codons with Bio::Tools::CodonTable   David Messina
• [Bioperl-l] Problems with consed.pm   Shailesh L Mistry
• [Bioperl-l] Re: Problems with consed.pm   Shailesh L Mistry
• [Bioperl-l] Please test   Shailesh L Mistry
• [Bioperl-l] Please test   Shailesh L Mistry
• [Bioperl-l] Please test   Shailesh L Mistry
• [Bioperl-l] Please test   Shailesh L Mistry
• [Bioperl-l] Please test   Shailesh L Mistry
• [Bioperl-l] Please test   Shailesh L Mistry
• [Bioperl-l] Please test   Shailesh L Mistry
• [Bioperl-l] Please test   Shailesh L Mistry
• [Bioperl-l] Please test   Shailesh L Mistry
• [Bioperl-l] Please test   Shailesh L Mistry
• [Bioperl-l] Structured (nested) Annotation   Chris Mungall
• [Bioperl-l] Behavior of Bio::Species object   Michael Muratet
• [Bioperl-l] Behavior of Bio::Species object   Michael Muratet
• [Bioperl-l] error using Bio::DB::DBFetch   Andy Nunberg
• [Bioperl-l] The Illuminati Order   The Illuminati Order
• [Bioperl-l] Structured (nested) Annotation   Francis Ouellette
• [Bioperl-l] AcePerl ported to OS X?   Michael F. Palopoli
• [Bioperl-l] filter span   Pedro
• [Bioperl-l] bioperl dna pairwise local alignment   Mike Pheasant
• [Bioperl-l] bioperl dna pairwise local alignment   Mike Pheasant
• [Bioperl-l] est2genome and bioperl   Charles Plessy
• [Bioperl-l] Problem make-ing, arg list too long   Scott Presnell
• [Bioperl-l] SeqFeature design   Seth Purcell
• [Bioperl-l] SeqFeature design   Seth Purcell
• [Bioperl-l] make test on perl 5.8   Todd Richmond
• [Bioperl-l] make test on perl 5.8   Todd Richmond
• [Bioperl-l] CVS Access Problem   Daniel Riordan
• [Bioperl-l] CVS Access Problem   Daniel Riordan
• [Bioperl-l] getting database hit sequences   Remo Sanges
• [Bioperl-l] Appending blast results for multi sequence data set.   Remo Sanges
• [Bioperl-l] Bio::Index::Fasta query   Peter Schattner
• [Bioperl-l] tr/// and eval   Pat Schloss
• [Bioperl-l] Bio::Cluster::Family   Shawn
• [Bioperl-l] motif features?   Shawn
• [Bioperl-l] Make test seems happy   Ed Allen Smith
• [Bioperl-l] EST Alignment questions   Robson Francisco de Souza
• [Bioperl-l] New module: Bio::Tools::SubLoc   Cory Spencer
• [Bioperl-l] StandAloneBlast   Cory Spencer
• [Bioperl-l] parameter/method naming conventions   Jason Stajich
• [Bioperl-l] est2genome and bioperl   Jason Stajich
• [Bioperl-l] taxonomic information handler   Jason Stajich
• [Bioperl-l] GenericHSP methods   Jason Stajich
• [Bioperl-l] GenericHSP methods   Jason Stajich
• [Bioperl-l] taxonomic information handler   Jason Stajich
• [Bioperl-l] fixed spliced seq   Jason Stajich
• [Bioperl-l] GenericHSP methods   Jason Stajich
• [Bioperl-l] error using Bio::DB::DBFetch   Jason Stajich
• [Bioperl-l] unsupported close() in SeqIO   Jason Stajich
• [Bioperl-l] blasting with multiple query sequences?   Jason Stajich
• [Bioperl-l] blasting with multiple query sequences?   Jason Stajich
• [Bioperl-l] SeqFeature design   Jason Stajich
• [Bioperl-l] SeqFeature design   Jason Stajich
• [Bioperl-l] bioperl reference   Jason Stajich
• [Bioperl-l] Re: [Bioperl-guts-l] real module issues   Jason Stajich
• [Bioperl-l] cvs commit info msgs   Jason Stajich
• [Bioperl-l] sequence filtering   Jason Stajich
• [Bioperl-l] how-to writers   Jason Stajich
• [Bioperl-l] Bug Question   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1267 (fwd)   Jason Stajich
• [Bioperl-l] raw blast report lines from SearchIO   Jason Stajich
• [Bioperl-l] Please test   Jason Stajich
• [Bioperl-l] Re: Fwd: questions and freeze (fwd)   Jason Stajich
• [Bioperl-l] AutoDia   Jason Stajich
• [Bioperl-l] PrimarySeq::length   Jason Stajich
• [Bioperl-l] est2genome   Jason Stajich
• [Bioperl-l] (no subject)   Jason Stajich
• [Bioperl-l] Please test   Jason Stajich
• [Bioperl-l] Please test   Jason Stajich
• [Bioperl-l] ...One more time...   Jason Stajich
• [Bioperl-l] about staley parser   Jason Stajich
• [Bioperl-l] IO::String   Jason Stajich
• [Bioperl-l] Start and end of query sequence in HSPs   Jason Stajich
• [Bioperl-l] Start and end of query sequence in HSPs   Jason Stajich
• [Bioperl-l] SeqIO embl parser bug?   Jason Stajich
• [Bioperl-l] motif features?   Jason Stajich
• [Bioperl-l] Seq objects from string   Jason Stajich
• [Bioperl-l] feature additional tag order in GFF   Jason Stajich
• [Bioperl-l] chgs to seqfeature::generic   Jason Stajich
• [Bioperl-l] seq_inds method question for blast parsing...   Jason Stajich
• [Bioperl-l] feature additional tag order in GFF   Jason Stajich
• [Bioperl-l] query name in xml blast report   Jason Stajich
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Jason Stajich
• [Bioperl-l] Re: [Bioperl-guts-l] (no subject)   Jason Stajich
• [Bioperl-l] Re: [Root-l] new Bioperl bug tracking system   Jason Stajich
• [Bioperl-l] StandAloneBlast   Jason Stajich
• [Bioperl-l] Bio::Cluster   Jason Stajich
• [Bioperl-l] AnnotatableI   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1277 (fwd)   Jason Stajich
• [Bioperl-l] problems with $enzyme->site(); for enzyme NlaIII or TspRI   Jason Stajich
• [Bioperl-l] parsing blast HIT with multiple GIs   Jason Stajich
• [Bioperl-l] rev translating stop codons with Bio::Tools::CodonTable   Jason Stajich
• [Bioperl-l] parsing blast HIT with multiple GIs   Jason Stajich
• [Bioperl-l] attribute setting and return value   Lincoln Stein
• [Bioperl-l] Bio::GRaphics query   Lincoln Stein
• [Bioperl-l] Bio::SeqFeatureI issues   Lincoln Stein
• [Bioperl-l] Re: [BioSQL-l] seqfeature.display_id   Lincoln Stein
• [Bioperl-l] Re: [BioSQL-l] seqfeature.display_id   Lincoln Stein
• POD fixes Re: [Bioperl-l] Push for 1.1.1 developer's release this week   Lincoln Stein
• [Bioperl-l] AcePerl ported to OS X?   Lincoln Stein
• [Bioperl-l] Bio::Graphics & Binding Sites visualization   Lincoln Stein
• [Bioperl-l] Bio::Graphics & Binding Sites visualization   Lincoln Stein
• [Bioperl-l] PrimarySeq::length   Lincoln Stein
• [Bioperl-l] make test on perl 5.8   Lincoln Stein
• [Bioperl-l] make test on perl 5.8   Lincoln Stein
• [Bioperl-l] bioperl reference   Elia Stupka
• [Bioperl-l] Proposed route to 1.2   Elia Stupka
• [Bioperl-l] Proposed route to 1.2   Elia Stupka
• [Bioperl-l] getting database hit sequences   Elia Stupka
• [Bioperl-l] Behavior of Bio::Species object   Elia Stupka
• [Bioperl-l] bioperl dna pairwise local alignment   Elia Stupka
• [Bioperl-l] New module: Bio::Tools::SubLoc   Elia Stupka
• [BioSQL-l] Re: [Bioperl-l] Re: Regarding the Bioperl-db you installed..   Elia Stupka
• [Bioperl-l] Start and end of query sequence in HSPs   Kasper Munch Terkelsen
• [Bioperl-l] Q: contributing a UniVec module to BioPerl   Tobias Thierer
• [Bioperl-l] Q: contributing a UniVec module to BioPerl   Tobias Thierer
• [Bioperl-l] blasting with multiple query sequences?   Tobias Thierer
• [Bioperl-l] getting database hit sequences   Tobias Thierer
• [Bioperl-l] raw blast report lines from SearchIO   Michael Thon
• [Bioperl-l] raw blast report lines from SearchIO   Michael Thon
• [Bioperl-l] Start and end of query sequence in HSPs   Michael Thon
• [Bioperl-l] seq_inds method question for blast parsing...   Sajeev Batra US-OPERON-Alameda
• [Bioperl-l] HMMER   Vilanova,David,LAUSANNE,NRC/BS
• [Bioperl-l] Seq objects from string   Mick Watson
• [Bioperl-l] Bio::SeqIO bug?   Mick Watson
• [Bioperl-l] GenericHSP methods   Wiepert, Mathieu
• [Bioperl-l] raw blast report lines from SearchIO   Wiepert, Mathieu
• [Bioperl-l] make test on perl 5.8   Wiepert, Mathieu
• [Bioperl-l] about remoteblast   Wiepert, Mathieu
• [Bioperl-l] Start and end of query sequence in HSPs   Wiepert, Mathieu
• [Bioperl-l] Multiple GI reference?   Wiepert, Mathieu
• [Bioperl-l] Re: MicroarrayIO proposal   Adam Witney
• [Bioperl-l] (no subject)   Wu, Liangtang
• [Bioperl-l] GO parser, GO engine   Chris Zmasek
• [Bioperl-l] GOengine, GOparser PODs   Chris Zmasek
• [Bioperl-l] fwd: bioperl howto volunteers   chris dagdigian
• [Bioperl-l] Bug Question   chris dagdigian
• [Bioperl-l] CVS Access Problem   chris dagdigian
• [Bioperl-l] CVS Access Problem   chris dagdigian
• [Bioperl-l] results of make test on bioperl-live w/ OpenBSD 3.1, Perl 5.6.1 and few dependencies installed   chris dagdigian
• [Bioperl-l] Re: installing downloaded BioPerl Bundle locally in a linux farm   chris dagdigian
• [Bioperl-l] new Bioperl bug tracking system   chris dagdigian
• [Bioperl-l] (no subject)   dong ke
• [Bioperl-l] More Powerful SEX available!! Stronger and long-lasting. Make your partner happ   mwoawoey@yahoo.com
• [Bioperl-l] enquiry   gerardo ramirez
• [Bioperl-l] motif features?   shawnh@fugu-sg.org
• FW: [Bioperl-l] Bio::Cluster   shawnh@fugu-sg.org
• [Bioperl-l] loading up swissprot into bioperl-db   shawnh@worf.fugu-sg.org
• [Bioperl-l] Installing Bioperl extensions on Windows   skirov
• [Bioperl-l] Invitation to SSGRR conferences in ITALY!   ssgrr2003w@rti7020.etf.bg.ac.yu
• [Bioperl-l] about staley parser   stanley
• [Bioperl-l] about FASTA report parser   stanley
• [Bioperl-l] about remoteblast   suhoiy
• [Bioperl-l] about remoteblast   suhoiy
• [Bioperl-l] parsing blast HIT with multiple GIs   suhoiy
• [Bioperl-l] parsing blast HIT with multiple GIs   suhoiy
• [Bioperl-l] parsing blast HIT with multiple GIs   suhoiy
• [Bioperl-l] ×𾴵Ŀͻ§£º   syhua3000
• [Bioperl-l] query name in xml blast report   gert thijs
• [Bioperl-l] problems with $enzyme->site(); for enzyme NlaIII or TspRI   felipe wettstein
• [Bioperl-l] problems with $enzyme->site(); for enzyme NlaIII or TspRI   felipe wettstein

Last message date: Thu Oct 31 23:40:33 2002
Archived on: Thu Oct 31 18:41:03 2002

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