[Bioperl-l] error using Bio::DB::DBFetch

[Jason Stajich]

Sure, but this should go in the README/INSTALL doc (which it currently
is).


On 2 Oct 2002, Heikki Lehvaslaiho wrote:

> Andy,
>
> Putting all the dependencies into all modules would be too difficult.
> We've put them all into Makefile.PL.
>
> When you install bioperl, even if you do not do the root install, you
> should run:
>
>    perl Makefile.PL   # makes a system-specific makefile
>    make               # makes the distribution
>    make test          # runs the test code
>
> to be sure that all the components work in your environment.
> See the INSTALL file for more details.
>
> Yours,
> 	-Heikki
>
>
> On Tue, 2002-10-01 at 17:16, Andy Nunberg wrote:
> > Hi,
> > I was trying to use Bio::DB::EMBL when I got an error when I tried this..
> > perl -e 'use Bio::DB::EMBL; $embl = new Bio::DB::EMBL;
> > $seq=$embl->get_Seq_by_acc('xxx');'
> >
> > error was..
> > Can't locate HTTP/Request/Common.pm in @INC etc....
> >
> > Following the trail Bio::DB::EMBL uses Bio::DB:DBFetch which calls
> > HTTP::Request::Common.
> >
> > I dont seem to have this module. I am wondering if its part of the normal
> > perl distribution.  If its not could you update the documentation to put
> > link where you list HTTP::Request::Common in the section of included
> > modules so I know where to find it (is it in CPAN etc..).  Also you could
> > write in big bold letters you need this module for DB::DBFetch to work..
> >
> > Thanks
> > Andy
> > *******************************************************************
> > Andy Nunberg, Ph.D
> > Computational Biologist
> > Orion Genomics, LLC
> > (314) 615-6989
> > http://www.oriongenomics.com
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l@bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
>

-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu