[Bioperl-l] error using Bio::DB::DBFetch

[Heikki Lehvaslaiho]

Andy,

Putting all the dependencies into all modules would be too difficult.
We've put them all into Makefile.PL. 

When you install bioperl, even if you do not do the root install, you
should run:

   perl Makefile.PL   # makes a system-specific makefile
   make               # makes the distribution
   make test          # runs the test code

to be sure that all the components work in your environment.
See the INSTALL file for more details.

Yours,
	-Heikki


On Tue, 2002-10-01 at 17:16, Andy Nunberg wrote:
> Hi,
> I was trying to use Bio::DB::EMBL when I got an error when I tried this..
> perl -e 'use Bio::DB::EMBL; $embl = new Bio::DB::EMBL;
> $seq=$embl->get_Seq_by_acc('xxx');'
> 
> error was..
> Can't locate HTTP/Request/Common.pm in @INC etc....
> 
> Following the trail Bio::DB::EMBL uses Bio::DB:DBFetch which calls
> HTTP::Request::Common.
> 
> I dont seem to have this module. I am wondering if its part of the normal
> perl distribution.  If its not could you update the documentation to put
> link where you list HTTP::Request::Common in the section of included
> modules so I know where to find it (is it in CPAN etc..).  Also you could
> write in big bold letters you need this module for DB::DBFetch to work..
> 
> Thanks
> Andy
> *******************************************************************
> Andy Nunberg, Ph.D
> Computational Biologist
> Orion Genomics, LLC 
> (314) 615-6989
> http://www.oriongenomics.com
> 
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-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
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