[Bioperl-l] Bio::Graphics & Binding Sites visualization

[Tommy Kaplan]

The trick is to have all arrows (=sites) on one line, but with different
colors/labels.

Tommy

On Thu, 10 Oct 2002, Lincoln Stein wrote:

> My naive way would be to use the generic glyph and specify a different color 
> for each TF type.  Use stranded=>1 to put an arrow on the end of the glyph.
> Maybe you want something more sophisticated?
> 
> Lincoln
> 
> On Thursday 10 October 2002 11:30 am, Tommy Kaplan wrote:
> > Hi.
> >
> > What would be the best way of visualizing a promoter sequence, with
> > putative binding sites of several transcription factors on it ?
> >
> > I've tried to do this with Glyph::transcript2, allowing different
> > colors for different TFs, with possible orientation for each site, but it
> > wasn't that trivial.
> >
> > Any ideas ?
> >
> > Thanks,
> > Tommy Kaplan
> >
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