[Bioperl-l] loading up swissprot into bioperl-db

[Hilmar Lapp]

You should be using bioperl-release-1-1-0 across the modules, i.e., biosql-schema, bioperl-db, and bioperl-live. Later versions of bioperl-live may work, later versions of the other two won't (unless you upgrade everything to their main trunks, but that would need innodb support).

What is the error message you're getting?

	-hilmar


> -----Original Message-----
> From: shawnh@worf.fugu-sg.org [mailto:shawnh@worf.fugu-sg.org]
> Sent: Tuesday, October 08, 2002 5:50 AM
> To: bioperl-l@bioperl.org
> Subject: [Bioperl-l] loading up swissprot into bioperl-db
> 
> 
> Hi,
> 	I'm trying to load up swissprot files into bioperl-db 
> and am trying out the branch bioperl-release-1-1-0. Currently get
> errors on the taxa table, since the store method in SpeciesAdaptor
> doesn't seem to be inserting the binomial and ncbi_taxa_id. Is this
> a problem of the schema and the code version being out of sync?
> or should I revert to a older version? I can't work off the main trunk
> as our mysql db here isn't compiled with INNODB.
> 
> 
> thanks
> 
> 
> shawn
> 
> 
> 
> 
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