[Bioperl-l] Please test

[Hilmar Lapp]

SCF is a binary format. I believe this is also a -kb omission error, 
I don't see that flag in cvs status. Jason, can you apply the same 
trick to t/data/chad100.scf?

	-hilmar


On Thursday, October 10, 2002, at 02:35 PM, Shailesh L Mistry wrote:

> t\scf........................dubious DIED. FAILED tests 2-15
>
> This test fails in scf.pm right at the end of next_seq.
> chad100.scf is being processed but it is returning from
> set_v2_bases with all the current base values set to zero.
>
> Can someone please run this test on a unix box, step into
> the set_v2_bases routine and tell me the values in @read
> the first time it is read.
>
> I am seeing @read = ( 854530, 51, 0, 4, 0, BLANK, 0, 13, 10)
> The BLANK being where the current base should have been.
>
> Does anyone have a web link to the scf file format specification?
> I think this problem may be related to the offset value from where
> we start reading in the info.
>
> On a side note, in set_v2_traces why set $array but never use it?
>
> Shelly.
>
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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