[Bioperl-l] HMMER

[Vilanova,David,LAUSANNE,NRC/BS]

Hello,
I have modified domain.pm and results.pm to retrieve the HMM model
description by adding a hmmdesc method.
This method will parse out the Hmm model description.

For exemple when parsing hmmpfam you can use it like this:
foreach $seq ( $res->each_Set ) 
		{
					
				foreach $domain ( $seq->each_Domain ) 
				{
					print " Hmm domain
",$domain->hmmname," Description ",$domain->hmmdesc,"\n";
				}
		}

The output will be:
Hmm domain AFP Description Insect antifreeze protein

Shall I post the files or can I have an account in the cvs repository.
By the way the method write_ascii_out seems to be buggy. Is anybody working
on that ???

David