[Bioperl-l] GenericHSP methods

[Paul Boutros]

Excellent!

Let me see if I understand this, then:
GenericHSP objects contain two LocatableSeq objects -- query and hit.  We
can reach through GenericHSP to call LocatableSeq methods directly.  Is
that what's goign on here?

Thanks,
Paul

On Tue, 1 Oct 2002, Wiepert, Mathieu wrote:

> Try:
> 
> > Is there anyway currently to get the:
> > -query_start
> 
> print "\t\tQuery Start: ", $hsp->query->start(), "\n";
> 
> > -query_end
> 
> print "\t\tQuery End: ", $hsp->query->end(), "\n";
> 
> > -hit_start
> 
> print "\t\tHSP Hit Start: ",$hsp->hit->start(), "\n";
> 
> > -hit_end
> 
> print "\t\tHSP Hit End: ",$hsp->hit->end(), "\n";
> 
> 
> 
> I can send you a test script as well if you like,
> 
> -Mat
> 
> 
>