[Bioperl-l] about FASTA report parser

[stanley]

Thanks Jason
The fasta parser that i want is a kind of FASTA report
parser.
I founld a pre-mature FASTAParser module and it is
intended for FASTA 3.3 report format.whatI downloaded
is the new-released FASTA program(3.4).
So anybody can email me a FASTA 3.3 report so that i
can test the FASTAParser.pm.
BTW,the linkage of BLAST from the documentation of
StandAloneBlast.pm all point to
ftp://ftp.ncbi.nlm.nih.gov/blast/server/current_release
 It is confusing sometime.
thanks 
stanley

--- Jason Stajich <jason@cgt.mc.duke.edu> wrote:
> On Mon, 14 Oct 2002, stanley wrote:
> 
> > hi guys
> > is there a FASTA parser in bioperl?
> yes
> 
> fasta alignment? --> Bio::SearchIO
> fasta sequence?  --> Bio::SeqIO
> 
> > another question is if i wanna run the
> > stanaloneblast.pm ,which local blast program i
> should
> > install:
> > one is wwwblast.Linux.tar.gz from
> >
>
ftp://ftp.ncbi.nlm.nih.gov/blast/server/current_release/or

> > blast.linux.tar.Z from
> > ftp://ftp.ncbi.nlm.nih.gov/blast/executables/
> Use this one. ^^^  See the perldoc for more
> information.
> 
> > thanks
> > Stanley
> >
> 
> -- 
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l


__________________________________________________
Do you Yahoo!?
Faith Hill - Exclusive Performances, Videos & More
http://faith.yahoo.com