[Bioperl-l] Please test

[Hilmar Lapp]

I found Jason's email and just did this myself on t/data/*.scf 
(there are more). Shelly, can you cvs update and then test again 
(the anonymous cvs copy may need an 1-2 hrs to resync)?

	-hilmar

On Thursday, October 10, 2002, at 04:44 PM, Hilmar Lapp wrote:

> SCF is a binary format. I believe this is also a -kb omission 
> error, I don't see that flag in cvs status. Jason, can you apply 
> the same trick to t/data/chad100.scf?
>
> 	-hilmar
>
>
> On Thursday, October 10, 2002, at 02:35 PM, Shailesh L Mistry wrote:
>
>> t\scf........................dubious DIED. FAILED tests 2-15
>>
>> This test fails in scf.pm right at the end of next_seq.
>> chad100.scf is being processed but it is returning from
>> set_v2_bases with all the current base values set to zero.
>>
>> Can someone please run this test on a unix box, step into
>> the set_v2_bases routine and tell me the values in @read
>> the first time it is read.
>>
>> I am seeing @read = ( 854530, 51, 0, 4, 0, BLANK, 0, 13, 10)
>> The BLANK being where the current base should have been.
>>
>> Does anyone have a web link to the scf file format specification?
>> I think this problem may be related to the offset value from where
>> we start reading in the info.
>>
>> On a side note, in set_v2_traces why set $array but never use it?
>>
>> Shelly.
>>
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l@bioperl.org
>> http://bioperl.org/mailman/listinfo/bioperl-l
>>
> --
> -------------------------------------------------------------
> Hilmar Lapp                            email: lapp at gnf.org
> GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
> -------------------------------------------------------------
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
>
--
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------