[Bioperl-l] about staley parser

[Jason Stajich]

On Mon, 14 Oct 2002, stanley wrote:

> hi guys
> is there a FASTA parser in bioperl?
yes

fasta alignment? --> Bio::SearchIO
fasta sequence?  --> Bio::SeqIO

> another question is if i wanna run the
> stanaloneblast.pm ,which local blast program i should
> install:
> one is wwwblast.Linux.tar.gz from
> ftp://ftp.ncbi.nlm.nih.gov/blast/server/current_release/or
> blast.linux.tar.Z from
> ftp://ftp.ncbi.nlm.nih.gov/blast/executables/
Use this one. ^^^  See the perldoc for more information.

> thanks
> Stanley
>

-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu