[Bioperl-l] raw blast report lines from SearchIO

[Michael Thon]

It looks like there's lots of goodies in Writer that I need to look at.
I'm reformatting blast results into embl format so I can view them with
Artemis (hopefully, I'm not reinventing the wheel here).  My lab mates
would also like to see the results in the more familiar text blast report
format.  I was thinking to include a snipet of the original blast report
as a qualifier-value pair in the embl file so the appropriate part of the
blast report could be viewed with the other info about the feature.
-Mike



On Thu, 10 Oct 2002, Jason Stajich wrote:

> I don't think so.
>
> Can you explain what you are trying to do?  I have written
> Bio::SearchIO::Writer::TextResultWriter which will reconstitute a blast
> report from the Bio::Search objects, it produces output *almost* identical
> to a NCBI blast report.
>
> -jason
>
> On Thu, 10 Oct 2002, Michael Thon wrote:
>
> > Greetings-  Is there a method to return the raw, unparsed lines of a blast
> > report Hit or HSP using SearchIO?  Thanks
> > Mike THon
> >
> >
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>
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
>
>
>