[Bioperl-l] Please test

[Shailesh L Mistry]

t\scf........................dubious DIED. FAILED tests 2-15

This test fails in scf.pm right at the end of next_seq.
chad100.scf is being processed but it is returning from 
set_v2_bases with all the current base values set to zero.

Can someone please run this test on a unix box, step into
the set_v2_bases routine and tell me the values in @read
the first time it is read.

I am seeing @read = ( 854530, 51, 0, 4, 0, BLANK, 0, 13, 10)
The BLANK being where the current base should have been.

Does anyone have a web link to the scf file format specification?
I think this problem may be related to the offset value from where 
we start reading in the info.

On a side note, in set_v2_traces why set $array but never use it?

Shelly.