[Bioperl-l] Bio::Graphics & Binding Sites visualization

[Lincoln Stein]

My naive way would be to use the generic glyph and specify a different color 
for each TF type.  Use stranded=>1 to put an arrow on the end of the glyph.
Maybe you want something more sophisticated?

Lincoln

On Thursday 10 October 2002 11:30 am, Tommy Kaplan wrote:
> Hi.
>
> What would be the best way of visualizing a promoter sequence, with
> putative binding sites of several transcription factors on it ?
>
> I've tried to do this with Glyph::transcript2, allowing different
> colors for different TFs, with possible orientation for each site, but it
> wasn't that trivial.
>
> Any ideas ?
>
> Thanks,
> Tommy Kaplan
>
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