[Bioperl-l] about remoteblast

[Wiepert, Mathieu]

Hi,

I am not sure which version of bioperl-run you are using, but the latest version appears to do what you want.  It may be confusion because you need to actually change the RETRIEVALHEADER value, not he HEADER value.  

I tested this using the script from the POD header of the RemoteBlast, adding the line, 

$Bio::Tools::Run::RemoteBlast::RETRIEVALHEADER{'NCBI_GI'} = 'on';
and toggling it to see what the different output might be.

With gi's on, I got
gi|19855070|sp|O95050|INMT_HUMAN Indolethylamine N-methyltransfe...   545   e-155
and off
sp|O95050|INMT_HUMAN Indolethylamine N-methyltransferase (Aromat...   545   e-155

so, it should work for you.  If it doesn't, let me know...

-Mat


> -----Original Message-----
> From: suhoiy [mailto:suhoiy@21cn.com]
> Sent: Tuesday, October 15, 2002 12:03 PM
> To: bioperl-l@bioperl.org
> Subject: [Bioperl-l] about remoteblast
> 
> 
> Dear All,
> 
> The blast results by RemoteBlast module and by NCBI web blast 
> are a little different. For example, NCBI web blast will give the GI
> number of each hit while RemoteBlast module will not. The header 
> "NCBI_GI" of RemoteBlast module is turned off.  How can I reset 
> those headers? 
> 
> Many thanks.
> 
> Qiang Tu
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
>