[Bioperl-l] Start and end of query sequence in HSPs

[Kasper Munch Terkelsen]

Dear all

Does anyone know how to get hold of the start and end positions of a
sbjct sequence in a HSP? I am using the StandAloneBlast module, so I
think I am confined to using the Search and SearchIO modules to parse
the BLAST reports because the blastall method returns a blast
object. So what I am after is simply the two numbers at the ends of
each HSP as they appear in the blast report. Please help me, I am
desperate!

Regards Kasper

-- 
Kasper Munch Terkelsen
Bioinformatics Centre
University of Copenhagen
15, Universitetsparken
2100 Copenhagen Ø
Denmark

Office  tlf. +45 3532 1348 (Direct)
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Homepage http://www.daimi.au.dk/~kmt
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