[Bioperl-l] Re: Regarding the Bioperl-db you installed..

[Chris Dagdigian]

Hi Andrew,

My BioSQL howto/install diary document is out of date with respect to 
the current codebases for both bioperl-db and biosql. Updating that 
document is high on my to-do list as I need to get some MacOS X specific 
pointers in there.

I'm cc'ing this reply to both the biosql and bioperl mailing lists to 
see if anyone else can answer your specific questions. I'm no longer 
sure if people should be downloading the live branch from CVS or some 
tagged version instead.

Any feedback from you on how to improve the document would greatly be 
appreciated

Regards,
Chris


Dr. Andrew Michael Lynn wrote:
> Hi, 
>  
> I run a course where I am trying to get our students acquainted with Bioperl. In order to make 
> things more exciting, we attempted to setup a core server system with Apache, bioperl and wanted to 
> have an SQL backend. I noticed your HOWTO on setting up MyGenBank ... we cannot set up the 
> bioperl-db, possibly because of conflicts between versions. I note from the biosql newsgroup that 
> the head of the CVS should not be used but the branch tagged bioperl-1-1 is stable. I cannot get 
> this to run as well - there are SQL errors. Can you tell me the versions of  
> 1. Bioperl 
> 2. MySQL 
> 3. Bioperl-db/biosql 
> you used? 
>  
> I have bioperl 1.0.2, MySQL 3.23.49-3 (Redhat 7.3) and  various versions of bioperl-db. 
>  
> We will be glad to help in writing the HOWTO's. 
>  
> With regards, 
> Andrew Lynn 
>  
> __________________________________________________ 
> Andrew Lynn, Ph.D 
> Assistant Professor, 
> Bioinformatics Centre. 
> School of Information Technology, 
> Jawaharlal Nehru University (http://www.jnu.ac.in) 
> New Delhi - 110 067, India 



-- 
Chris Dagdigian, <dag@sonsorol.org>
Independent life science IT & research computing consulting
Office: 617-666-6454, Mobile: 617-877-5498, Fax: 425-699-0193
Work: http://BioTeam.net PGP KeyID: 83D4310E  Yahoo IM: craffi