[Bioperl-l] Problems with consed.pm

[Shailesh L Mistry]

Hi All,

I tried to use the email (bioperl-bugs@bio.perl.org) listed at
(http://www.bioperl.org/Bugs/) but the email could not be delivered.

I have just downloaded the latest bioperl-live source and I get an error with
consed.t on WinNT (not using cygwin).

The error messages states "dumpValue is not exported by the Dumpvalue module at
/Bio/Tools/Alignment/Consed.pm line 105".

Given that "dumpValue" is no longer exported by "Dumpvalue", this can be fixed
in the code by changing line 105 in Consed.pm from

use Dumpvalue qw(dumpValue);

to

use Dumpvalue;



I also see the following :-

# Test 12 got: '114' (t\consed.t at line 88)
# Expected: '179'
# Test 14 got: '179' (t\consed.t at line 93)
# Expected '114'

does anyone else see this?


Shelly.