July 2003 Archives by thread

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Starting: Tue Jul 1 08:31:10 EST 2003
Ending: Thu Jul 31 23:18:15 EST 2003
Messages: 370

• [Bioperl-l] BioPerl CPAN   Nathan (Nat) Goodman
  • [Bioperl-l] BioPerl CPAN   Heikki Lehvaslaiho
    • [Bioperl-l] BioPerl CPAN   Steve Mathias
    • [Bioperl-l] BioPerl CPAN   Heikki Lehvaslaiho
      • [Bioperl-l] BioPerl CPAN   Jarkko Hietaniemi
    • [Bioperl-l] BioPerl CPAN   Jarkko Hietaniemi
      • [Bioperl-l] BioPerl CPAN   Aaron J Mackey
    • [Bioperl-l] BioPerl CPAN   Nathan (Nat) Goodman
      • [Bioperl-l] BioPerl CPAN   Lincoln Stein
      • [Bioperl-l] BioPerl CPAN   Ewan Birney
      • [Bioperl-l] BioPerl CPAN   Nathan (Nat) Goodman
      • [Bioperl-l] BioPerl CPAN   Ewan Birney
      • [Bioperl-l] BioPerl CPAN   Allen Day
      • [Bioperl-l] BioPerl CPAN   Nathan (Nat) Goodman
• [Bioperl-l] Sim4 output parsing using Bioperl   Arnaud Kerhornou
  • [Bioperl-l] Sim4 output parsing using Bioperl   Jason Stajich
    • [Bioperl-l] Sim4 output parsing using Bioperl   Arnaud Kerhornou
      • [Bioperl-l] Sim4 output parsing using Bioperl   Jason Stajich
      • [Bioperl-l] Sim4 output parsing using Bioperl   Arnaud Kerhornou
      • [Bioperl-l] Sim4 output parsing using Bioperl   Jason Stajich
      • [Bioperl-l] Sim4 output parsing using Bioperl   Jason Stajich
      • [Bioperl-l] Sim4 output parsing using Bioperl   Hilmar Lapp
      • [Bioperl-l] Sim4 output parsing using Bioperl   Chris Mungall
      • [Bioperl-l] Sim4 output parsing using Bioperl   Jason Stajich
• [Bioperl-l] Where could I find FISH Map information in mapview data or somewhere else?   ole.st at gmx.de
  • [Bioperl-l] Where could I find FISH Map information in mapview data or somewhere else?   Heikki Lehvaslaiho
• [Bioperl-l] How to extract organism information from blast report?   ying lin
  • [Bioperl-l] How to extract organism information from blast report?   Jason Stajich
    • [Bioperl-l] How to extract organism information from blast report?   ying lin
      • [Bioperl-l] How to extract organism information from blast report?   Jason Stajich
      • [Bioperl-l] How to extract organism information from blast report?   ying lin
• [Bioperl-l] bioperl-1.2.2 - Release Candidiate 1   Heikki Lehvaslaiho
  • [Bioperl-l] bioperl-1.2.2 - Release Candidiate 1   Jason Stajich
• [Bioperl-l] BioPerl CPAN   Jason Stajich
• [Bioperl-l] Nucleotide analysis modules - bugzilla # 1422   Heikki Lehvaslaiho
• [Bioperl-l] Where could I find FISH Map information in mapview data or somewhere else?   Sang Chul Choi
  • [Bioperl-l] Where could I find FISH Map information in mapview data or somewhere else?   Heikki Lehvaslaiho
• [Bioperl-l] VIRUS IN IHRER NACHRICHT AN bechtel@ipcon.de   virusmaster at ipcon.de
• [Bioperl-l] How to extract organism information from blast report?   Stefano Ghignone
• [Bioperl-l] bioperl-1.2.2 - Release Candidiate 1   Qiang TU
• [Bioperl-l] How to extract organism information from blast report?   Stefano Ghignone
• [Bioperl-l] progress for 1.2.2 bugfix releae   Hilmar Lapp
• [Bioperl-l] change the location coordinates of a Bio::SeqFeat ureI object   Hilmar Lapp
• [Bioperl-l] module for unflattening GenBank/EMBL/DDBJ records   Hilmar Lapp
• [Bioperl-l] Bio::Ontology additions   Hilmar Lapp
  • [Bioperl-l] Bio::Ontology additions   Allen Day
• [Bioperl-l] module for unflattening GenBank/EMBL/DDBJ records   Chris Mungall
• [Bioperl-l] Bio::Graphics   Josh Lauricha
  • [Bioperl-l] Bio::Graphics   Josh Lauricha
    • [Bioperl-l] Bio::Graphics   Lincoln Stein
• [Bioperl-l] searching pubmed   Jonathan Yom-Tov
  • [Bioperl-l] searching pubmed   Brian Osborne
• [Bioperl-l] problems with Biblio   Jonathan Yom-Tov
• [Bioperl-l] 2003 CSHL Computational Genomics Course   William R. Pearson
• [Bioperl-l] SignalP bug in predict_protein_features?   david.vilanova at urbanet.ch
  • [Bioperl-l] SignalP bug in predict_protein_features?   Shawn Hoon
• [Bioperl-l] Genbank interface changed, or is it just temporarily down?   Mark Wilkinson
• [Bioperl-l] How do you change the default on Bio::DB::GenBank?   Hilmar Lapp
  • [Bioperl-l] How do you change the default on Bio::DB::GenBank?   Mark Wilkinson
    • [personal] RE: [Bioperl-l] How do you change the default on Bio::DB::GenBank?   Mark Wilkinson
    • [Bioperl-l] How do you change the default on Bio::DB::GenBank?   Jason Stajich
      • [Bioperl-l] How do you change the default on Bio::DB::GenBank?   Hilmar Lapp
      • [Bioperl-l] How do you change the default on Bio::DB::GenBank?   Lincoln Stein
    • [Bioperl-l] How do you change the default on Bio::DB::GenBank?   Jason Stajich
• [Bioperl-l] SeqFeature->_expand_region   Chris Mungall
  • [Bioperl-l] SeqFeature->_expand_region   Hilmar Lapp
    • [Bioperl-l] SeqFeature->_expand_region   Chris Mungall
      • [Bioperl-l] SeqFeature->_expand_region   Hilmar Lapp
      • [Bioperl-l] SeqFeature->_expand_region   Hilmar Lapp
      • [Bioperl-l] SeqFeature->_expand_region   Heikki Lehvaslaiho
      • [Bioperl-l] SeqFeature->_expand_region   Chris Mungall
  • [Bioperl-l] SeqFeature->_expand_region   Jason Stajich
• [Bioperl-l] get_Seq_by_acc() in Bio::DB::GeneBank failed   Gregory Wilson
• [Bioperl-l] How do you change the default on Bio::DB::GenBank?   Mark Wilkinson
• [Bioperl-l] best coding practices   Hilmar Lapp
  • [Bioperl-l] best coding practices   Jason Stajich
    • [Bioperl-l] best coding practices   Hilmar Lapp
• [Bioperl-l] Bio::DB::GFF trouble + Blast question   Venky Nandagopal
  • [Bioperl-l] Bio::DB::GFF trouble + Blast question   Lincoln Stein
    • [Bioperl-l] Bio::DB::GFF trouble + Blast question   Venky Nandagopal
• [Bioperl-l] Bio::DB::GenBank get_seq_by_acc   James Wasmuth
  • [Bioperl-l] Bio::DB::GenBank get_seq_by_acc   Edith Schlagenhauf
    • [Bioperl-l] Bio::DB::GenBank get_seq_by_acc   Heikki Lehvaslaiho
• [Bioperl-l] Indexing est fasta file.   Ivan Sendin
  • [Bioperl-l] Indexing est fasta file.   Brian Osborne
    • [Bioperl-l] Indexing est fasta file.   Ivan Sendin
      • [Bioperl-l] Indexing est fasta file.   Brian Osborne
      • [Bioperl-l] Indexing est fasta file.   Ivan Sendin
      • [Bioperl-l] Indexing est fasta file.   Lincoln Stein
• [Bioperl-l] About handleing the UniGene database file   darson
  • [Bioperl-l] About handleing the UniGene database file   Jason Stajich
• [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw in Bioperl 1.2?   ÑîÐ¥ÁÖ
• [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw in Bioperl 1.2?   ÑîÐ¥ÁÖ
  • [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw in Bioperl 1.2?   Jason Stajich
  • [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw in Bioperl 1.2?   Shawn Hoon
    • Bioperl-run release policy Re: [Bioperl-l] Bio::Tools::Run::Alignment::Clustalw in Bioperl 1.2?   Heikki Lehvaslaiho
      • [Bioperl-l] Re: Bioperl-run release policy   Shawn Hoon
      • [Bioperl-l] Re: Bioperl-run release policy   Heikki Lehvaslaiho
• [Bioperl-l] how to change the sequence of a Bio::Seq object   Peili Zhang
  • [Bioperl-l] how to change the sequence of a Bio::Seq object   Jason Stajich
• [Bioperl-l] how to change the sequence of a Bio::Seq object   Peili Zhang
  • [Bioperl-l] how to change the sequence of a Bio::Seq object   Jason Stajich
  • [Bioperl-l] how to change the sequence of a Bio::Seq object   Brian Osborne
    • [Bioperl-l] how to change the sequence of a Bio::Seq object   Hilmar Lapp
• [Bioperl-l] Re: Bio::DB::GFF trouble + Blast question   Scott Cain
  • [Bioperl-l] Re: Bio::DB::GFF trouble + Blast question   Venky Nandagopal
    • [Bioperl-l] Re: Bio::DB::GFF trouble + Blast question   Scott Cain
      • [Bioperl-l] Re: Bio::DB::GFF trouble + Blast question   Venky Nandagopal
      • [Bioperl-l] Re: Bio::DB::GFF trouble + Blast question   Scott Cain
• [Bioperl-l] How to Handle Parse Errors   dmcwilli
  • [Bioperl-l] How to Handle Parse Errors   Heikki Lehvaslaiho
    • [Bioperl-l] How to Handle Parse Errors   Hilmar Lapp
      • [Bioperl-l] How to Handle Parse Errors   Heikki Lehvaslaiho
• [Bioperl-l] Bio::Index::Hmmer   Josh Lauricha
• [Bioperl-l] cloning, upgrading, downgrading and conversion functionality   Marc Logghe
• [Bioperl-l] seq features with locations on remote entries?   Matthew Betts
  • [Bioperl-l] seq features with locations on remote entries?   Hilmar Lapp
    • [Bioperl-l] seq features with locations on remote entries?   Matthew Betts
      • [Bioperl-l] seq features with locations on remote entries?   Hilmar Lapp
• [Bioperl-l] bioperl-1.2.2 - Release Candidiate 2   Heikki Lehvaslaiho
  • [Bioperl-l] bioperl-1.2.2 - Release Candidiate 2   Rob Edwards
    • [Bioperl-l] bioperl-1.2.2 - Release Candidiate 2   Heikki Lehvaslaiho
• [Bioperl-l] How to represent no alignment?   Yee Man Chan
  • [Bioperl-l] How to represent no alignment?   Jason Stajich
  • [Bioperl-l] How to represent no alignment?   Ewan Birney
• [Bioperl-l] [Bioperl-guts-l] Location of sequence text extractions (fwd)   Jason Stajich
• [Bioperl-l] distant thoughts from a dinosaur...   Ewan Birney
  • [Bioperl-l] distant thoughts from a dinosaur...   Hilmar Lapp
    • [Bioperl-l] distant thoughts from a dinosaur...   Elia Stupka
  • [Bioperl-l] distant thoughts from a dinosaur...   Steve Chervitz
    • [Bioperl-l] distant thoughts from a dinosaur...   Lincoln Stein
      • [Bioperl-l] distant thoughts from a dinosaur...   Chris Mungall
      • [Bioperl-l] distant thoughts from a dinosaur...   Lincoln Stein
  • [Bioperl-l] distant thoughts from a dinosaur...   Heikki Lehvaslaiho
    • BPN: BioPerl Nouveau [Was: Re: [Bioperl-l] distant thoughts from a dinosaur...]   Aaron J Mackey
      • BPN: BioPerl Nouveau [Was: Re: [Bioperl-l] distant thoughts from a dinosaur...]   Ewan Birney
      • BPN: BioPerl Nouveau [Was: Re: [Bioperl-l] distant thoughts from a dinosaur...]   Ewan Birney
      • BPN: BioPerl Nouveau [Was: Re: [Bioperl-l] distant thoughts from a dinosaur...]   Aaron J Mackey
      • BPN: BioPerl Nouveau [Was: Re: [Bioperl-l] distant thoughts from a dinosaur...]   Ewan Birney
      • BPN: BioPerl Nouveau [Was: Re: [Bioperl-l] distant thoughts from a dinosaur...]   Hilmar Lapp
      • BPN: BioPerl Nouveau [Was: Re: [Bioperl-l] distant thoughts from a dinosaur...]   Heikki Lehvaslaiho
      • BPN: BioPerl Nouveau [Was: Re: [Bioperl-l] distant thoughts from a dinosaur...]   Lincoln Stein
• [Bioperl-l] Using primer3   Mike Muratet
  • [Bioperl-l] Using primer3   Shawn Hoon
    • [Bioperl-l] Using primer3   Rob Edwards
    • [Bioperl-l] Using primer3   Heikki Lehvaslaiho
      • [Bioperl-l] Using primer3   Shawn Hoon
      • [Bioperl-l] Using primer3   Shawn Hoon
    • [Bioperl-l] Using primer3   Mike Muratet
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Heikki Lehvaslaiho
  • [Bioperl-l] Makefile.PL   Jason Stajich
    • [Bioperl-l] Makefile.PL   Heikki Lehvaslaiho
• [Bioperl-l] Re: Bio::Tree::RandomFactory   Doug McLean
• [Bioperl-l] Bioperl 1.2.2 released   Heikki Lehvaslaiho
• [Bioperl-l] specifying options in StandAloneBlast.pm   Michael R Olson
  • [Bioperl-l] specifying options in StandAloneBlast.pm   Jason Stajich
• [Bioperl-l] PAML parsing   Jason Stajich
• [Bioperl-l] Help with testing of parallel Smith-Waterman code on x86 workstations   Nemo Physche
  • [Bioperl-l] Help with testing of parallel Smith-Waterman code on x86 workstations   Aaron J Mackey
  • [Bioperl-l] Help with testing of parallel Smith-Waterman code on x86 workstations   Jonathan Epstein
  • [Bioperl-l] Help with testing of parallel Smith-Waterman code on x86 workstations   Nemo Physche
• [Bioperl-l] BioPerl CPAN & roadmap   Nathan (Nat) Goodman
• [Bioperl-l] HT search error   Stefan Kirov
• [Bioperl-l] off by one problem w/exonerate & search2gff.pl ?   Charles Hauser
  • [Bioperl-l] off by one problem w/exonerate & search2gff.pl ?   Jason Stajich
• [Bioperl-l] Installation on Win32   Pauline Ward
  • [Bioperl-l] Installation on Win32   Brian Osborne
• [Bioperl-l] mfold parser   Allen Day
• [Bioperl-l] Re:For All Non Profit Organizations   limited_offer_actnow_nonprofit_only662191 at cs.com
• [Bioperl-l] poblems with object's locations   Sergiy Ivakhno
• [Bioperl-l] how do I automatically update gene coordinates after re-sequencing   Marcus Claesson
• [Bioperl-l] poblems with object's locations   Marc Logghe
  • [Bioperl-l] poblems with object's locations   Hilmar Lapp
• [Bioperl-l] Questions on module installation   Li, Qingqin [PRDUS]
• [Bioperl-l] New restriction enzyme modules   Heikki Lehvaslaiho
• [Bioperl-l] help needed with __DATA__   Heikki Lehvaslaiho
  • [Bioperl-l] help needed with __DATA__   Shawn Hoon
    • [Bioperl-l] help needed with __DATA__   Heikki Lehvaslaiho
• [Bioperl-l] primer3 tests,files   Jason Stajich
  • [Bioperl-l] primer3 tests,files   Shawn Hoon
• [Bioperl-l] Re: RegSeq and NT_****** contig Id   Heikki Lehvaslaiho
  • [Bioperl-l] Re: RegSeq and NT_****** contig Id   Jason Stajich
• [Bioperl-l] module for unflattening GenBank/EMBL/DDBJ records   Peili Zhang
  • [Bioperl-l] module for unflattening GenBank/EMBL/DDBJ records   Chris Mungall
• [Bioperl-l] Volunteer needed, no programming   Heikki Lehvaslaiho
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Aaron J Mackey
  • [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Jason Stajich
• [Bioperl-l] Bio::Align::DNAStatistics extension?   Richard Adams
  • [Bioperl-l] Bio::Align::DNAStatistics extension?   Jason Stajich
• [Bioperl-l] red hat 9 & perl bugs   Charles Hauser
  • [Bioperl-l] red hat 9 & perl bugs   Mike Muratet
    • [Bioperl-l] red hat 9 & perl bugs   Kris Boulez
• [Bioperl-l] new Bio::Restriction classes   Heikki Lehvaslaiho
• [Bioperl-l] Re: bacterial genome annotation   Neil Saunders
  • [Bioperl-l] Re: bacterial genome annotation   Marcus Claesson
• [Bioperl-l] Version bug in GFF, bioperl 1.2.2   Andreas Kahari
  • [Bioperl-l] Version bug in GFF, bioperl 1.2.2   Lincoln Stein
    • [Bioperl-l] Version bug in GFF, bioperl 1.2.2   Andreas Kahari
• [Bioperl-l] bptutorial 24 bug   albert vilella
  • [Bioperl-l] bptutorial 24 bug   Brian Osborne
• [Bioperl-l] Bio Graphics   Laurence Amilhat
  • [Bioperl-l] Bio Graphics   Heikki Lehvaslaiho
  • [Bioperl-l] Bio Graphics   Lincoln Stein
• [Bioperl-l] Bio::DB::GFF   Eley Greg
  • [Bioperl-l] Bio::DB::GFF   Lincoln Stein
• [Bioperl-l] Hello LocusLink!!!   Line Neil
  • [Bioperl-l] Hello LocusLink!!!   Lincoln Stein
  • [Bioperl-l] Hello LocusLink!!!   Heikki Lehvaslaiho
• [Bioperl-l] Bio::Graphics::Glyph::translation magnification??   Lincoln Stein
  • [Bioperl-l] Bio::Graphics::Glyph::translation magnification??   Lincoln Stein
• [Bioperl-l] UCSC database -> GFF   Lincoln Stein
  • [Bioperl-l] UCSC database -> GFF   Allen Day
    • [Bioperl-l] UCSC database -> GFF   Paul Edlefsen
    • [Bioperl-l] UCSC database -> GFF   Ewan Birney
      • [Bioperl-l] UCSC database -> GFF   Paul Edlefsen
      • [Bioperl-l] UCSC database -> GFF   Lincoln Stein
• [Bioperl-l] Re: genbank chado loader or gff3 producer   Lincoln Stein
  • [Bioperl-l] Re: genbank chado loader or gff3 producer   Scott Cain
    • [Bioperl-l] Re: genbank chado loader or gff3 producer   Lincoln Stein
• [Bioperl-l] module for unflattening GenBank/EMBL/DDBJ records   Peili Zhang
  • [Bioperl-l] module for unflattening GenBank/EMBL/DDBJ records   Chris Mungall
• [Bioperl-l] Re:All Non Profit Organizations   harvey65 at topflightscore.com
• [Bioperl-l] quotes in features   Michael Muratet
  • [Bioperl-l] quotes in features   Brian Osborne
  • [Bioperl-l] quotes in features   Ewan Birney
    • [Bioperl-l] quotes in features   Michael Muratet
• [Bioperl-l] RE: Bio Graphics - ppm install GD - error occurred   Nigam Shah
  • [Bioperl-l] RE: Bio Graphics - ppm install GD - error occurred   Lincoln Stein
• [Bioperl-l] Bio::DB::Genbank Problem   MArkus Kador
  • [Bioperl-l] Bio::DB::Genbank Problem   Jason Stajich
• [Bioperl-l] What is the gap penalty function for BLOSUM62?   Yee Man Chan
  • [Bioperl-l] What is the gap penalty function for BLOSUM62?   Aaron J Mackey
    • [Bioperl-l] What is the gap penalty function for BLOSUM62?   Yee Man Chan
    • [Bioperl-l] Updated my dpAlign module   Yee Man Chan
  • [Bioperl-l] What is the gap penalty function for BLOSUM62?   Ewan Birney
• [Bioperl-l] SeqFeature containment hierarchies   Chris Mungall
  • [Bioperl-l] SeqFeature containment hierarchies   Hilmar Lapp
  • [Bioperl-l] SeqFeature containment hierarchies   Lincoln Stein
• [Bioperl-l] interface to Darwin?   Matthew Betts
• [Bioperl-l] Re: Bio Graphics - ppm install GD - error occurred   Tanya Gray
  • [Bioperl-l] Re: Bio Graphics - ppm install GD - error occurred   Brian Osborne
• [Bioperl-l] parsing coded_by subfeature   Jack Chen
  • [Bioperl-l] parsing coded_by subfeature   Jason Stajich
    • [Bioperl-l] parsing coded_by subfeature   Jack Chen
      • [Bioperl-l] parsing coded_by subfeature   Jason Stajich
      • [Bioperl-l] parsing coded_by subfeature   Jack Chen
• [Bioperl-l] problems with libraries for Bio::Graphics   Sergiy Ivakhno
  • [Bioperl-l] problems with libraries for Bio::Graphics   Lincoln Stein
• [Bioperl-l] Gap Penalties for BLOSUM62   William R.Pearson
  • [Bioperl-l] Bio::PrimarySeq and Selenocysteine   Lincoln Stein
    • [Bioperl-l] Bio::PrimarySeq and Selenocysteine   Heikki Lehvaslaiho
      • [Bioperl-l] Bio::PrimarySeq and Selenocysteine   Lincoln Stein
      • [Bioperl-l] Bio::PrimarySeq and Selenocysteine   Heikki Lehvaslaiho
• [Bioperl-l] trans-spliced genes & gff2 & chado   Charles Hauser
  • [Bioperl-l] trans-spliced genes & gff2 & chado   Chris Mungall
    • [Bioperl-l] trans-spliced genes & gff2 & chado   Lincoln Stein
  • [Bioperl-l] Re: [Gmod-gbrowse] trans-spliced genes & gff2 & chado   Lincoln Stein
• [Bioperl-l] parsing coded_by subfeature   Will Fischer
• [Bioperl-l] Converting Genbank to fasta via SeqIO   Wes Barris
  • [Bioperl-l] Converting Genbank to fasta via SeqIO   Heikki Lehvaslaiho
• [Bioperl-l] Module for McDonald-Kreitman   Jason Curole
  • [Bioperl-l] Module for McDonald-Kreitman   Jason Stajich
• [Bioperl-l] embl format   Michael R Olson
  • [Bioperl-l] embl format   Ewan Birney
• [Bioperl-l] installing bioperl on an SGI w/freeware perl, gcc, etc.   Wes Barris
  • [Bioperl-l] installing bioperl on an SGI w/freeware perl, gcc, etc.   Jason Stajich
• [Bioperl-l] Bio::Graphics - roblem with heterogeneous_segments   Dmitri Bichko
  • [Bioperl-l] Bio::Graphics - roblem with heterogeneous_segments   Lincoln Stein
• [Bioperl-l] testing for valid return from HTMLResultWriter   Charles Hauser
  • [Bioperl-l] Re: testing for valid return from HTMLResultWriter   Jason Stajich
• [Bioperl-l] SearchIO/blast.pm 1.2.2 bug   Jason Stajich
• [Bioperl-l] Bug in SearchIO in v 1.2.2   Gary Williams, Tel 01223 494522
• [Bioperl-l] parsing an html blast result file   Wes Barris
  • [Bioperl-l] parsing an html blast result file   Jason Stajich
• [Bioperl-l] distant thoughts from a dinosaur...   Hilmar Lapp
  • [Bioperl-l] distant thoughts from a dinosaur...   Chris Mungall
  • [Bioperl-l] distant thoughts from a dinosaur...   Lincoln Stein
    • [Bioperl-l] distant thoughts from a dinosaur...   Paul Edlefsen
• [Bioperl-l] Bioperl-1.2.2 installation fail on Mac Os 10.2.6   Shin Enomoto
  • [Bioperl-l] Bioperl-1.2.2 installation fail on Mac Os 10.2.6   Jason Stajich
• [Bioperl-l] BioPerl behind WebMarshall firewall   Holland, Richard
• [Bioperl-l] Adding new sequence format to AlignIO module   tulio de Oliveira
  • [Bioperl-l] Adding new sequence format to AlignIO module   Heikki Lehvaslaiho
• [Bioperl-l] Problem using StandAloneFasta about 80000 times...   Palle Villesen
  • [Bioperl-l] Problem using StandAloneFasta about 80000 times...   Jason Stajich
    • [Bioperl-l] [NT] Patch Submission (was: Problem using StandAloneFasta about 80000 times...)   Jonathan Barber
      • [Bioperl-l] [NT] Patch Submission (was: Problem using StandAloneFasta about 80000 times...)   Ewan Birney
    • [Bioperl-l] Problem using StandAloneFasta about 80000 times...   Palle Villesen (BiRC)
• [Bioperl-l] new methods for Bio::Align::DNAStatistics   Richard Adams
• [Bioperl-l] (no subject)   Christophe Bouvard
  • [Bioperl-l] (no subject)   Heikki Lehvaslaiho
• [Bioperl-l] Position scoring matrix objects   Stefan Kirov
  • [Bioperl-l] Position scoring matrix objects   Jason Stajich
• [Bioperl-l] QRNA parser   Jason Stajich
• [Bioperl-l] 未承諾広告※まだ間に合う！   あきな
• [Bioperl-l] Tree structure modification problems   Babenko, Vladimir
• MeSH terms in bioperl RE: [Bioperl-l] (no subject)   Heikki Lehvaslaiho
  • MeSH terms in bioperl RE: [Bioperl-l] (no subject)   Hilmar Lapp
    • MeSH terms in bioperl RE: [Bioperl-l] (no subject)   Heikki Lehvaslaiho
      • MeSH terms in bioperl RE: [Bioperl-l] (no subject)   Hilmar Lapp
• [Bioperl-l] List archives now searchable; feedback needed   Chris Dagdigian
  • [Bioperl-l] List archives now searchable; feedback needed   Brian Osborne
• [Bioperl-l] Re: RegSeq and NT_****** contig Id   Heikki Lehvaslaiho
• [Bioperl-l] process_sgd.PLS trouble   Venky Nandagopal
  • [Bioperl-l] process_sgd.PLS trouble   Jason Stajich
• [Bioperl-l] Re: Tree structure modification problems: Bug in remove_Descendent method   Babenko, Vladimir
• [Bioperl-l] filtering output from HTMLResultWriter   Charles Hauser
  • [Bioperl-l] filtering output from HTMLResultWriter   Jason Stajich
    • [Bioperl-l] filtering output from HTMLResultWriter   Charles Hauser
• [Bioperl-l] BioSQL or chado   Nathan (Nat) Goodman
  • [Bioperl-l] Re: BioSQL or chado   Chris Mungall
    • [Bioperl-l] Re: [Gmod-schema] Re: BioSQL or chado   Allen Day
      • [Bioperl-l] Re: [Gmod-schema] Re: BioSQL or chado   Chris Mungall
      • [Bioperl-l] Re: [Gmod-schema] Re: BioSQL or chado   Allen Day
      • [Bioperl-l] Re: [Gmod-schema] Re: BioSQL or chado   Hilmar Lapp
    • [Bioperl-l] Re: BioSQL or chado   Hilmar Lapp
      • [Bioperl-l] Re: BioSQL or chado   Nathan (Nat) Goodman
      • [Gmod-schema] RE: [Bioperl-l] Re: BioSQL or chado   Chris Stoeckert
      • [Gmod-schema] RE: [Bioperl-l] Re: BioSQL or chado   Arnaud Kerhornou
      • [Bioperl-l] Re: BioSQL or chado   Hilmar Lapp
    • [Bioperl-l] Re: BioSQL or chado   Ewan Birney
  • [Bioperl-l] BioSQL or chado   Steve Mathias
  • [Bioperl-l] BioSQL or chado   Andrew Nunberg
• [Bioperl-l] Bioperl install tests behind firewall   simon andrews (BI)
  • [Bioperl-l] Bioperl install tests behind firewall   Jason Stajich
    • [Bioperl-l] Bioperl install tests behind firewall   Heikki Lehvaslaiho
• [Bioperl-l] pdb.pm bug in atom/residue recognition   Dave Howorth
• [Bioperl-l] url of Pise has changed   Catherine Letondal
• [Gmod-schema] Re: [Bioperl-l] Re: BioSQL or chado   David Emmert
• [Bioperl-l] Re: [Gmod-schema] Re: BioSQL or chado   SLetovsky at aol.com
• [Bioperl-l] Bioperl install tests behind firewall   simon andrews (BI)
• [Bioperl-l] No version numbers on bioperl pms.   philip
  • [Bioperl-l] No version numbers on bioperl pms.   Jason Stajich
• [Bioperl-l] No version numbers on bioperl pms.   Philip MacMenamin
  • [Bioperl-l] No version numbers on bioperl pms.   Jason Stajich
    • [Bioperl-l] No version numbers on bioperl pms.   Philip MacMenamin
      • [Bioperl-l] how versions work in bioperl   Jason Stajich
      • [Bioperl-l] Re: how versions work in bioperl   Philip MacMenamin
• [Bioperl-l] failing tests   Hilmar Lapp
• [Bioperl-l] multiple inheritance   Jason Stajich
  • [Bioperl-l] multiple inheritance   Steve Mathias
  • [Bioperl-l] multiple inheritance   Ewan Birney
    • [Bioperl-l] multiple inheritance   Hilmar Lapp
• [Bioperl-l] multiple inheritance   Nathan (Nat) Goodman
• [Bioperl-l] Parsing a netblast file   Wes Barris
  • [Bioperl-l] Parsing a netblast file   Jason Stajich
    • [Bioperl-l] Parsing a netblast file   Wes Barris
      • [Bioperl-l] Parsing a netblast file   Jason Stajich
      • [Bioperl-l] Parsing a netblast file   Wes Barris
• [Bioperl-l] Panel add_track -label option does not work   Wes Barris
• [Bioperl-l] ps_scan parser and runner   Juguang Xiao
• [Bioperl-l] secondary structure: AlignI ?   Allen Day
  • [Bioperl-l] secondary structure: AlignI ?   Jason Stajich
• [Bioperl-l] $_ assignment question   Jonathan Barber
  • [Bioperl-l] $_ assignment question   Jason Stajich
    • [Bioperl-l] $_ assignment question   Jonathan Barber
  • [Bioperl-l] $_ assignment question   Hilmar Lapp
    • [Bioperl-l] $_ assignment question   Jason Stajich
      • [Bioperl-l] $_ assignment question   Hilmar Lapp
      • [Bioperl-l] $_ assignment question   Aaron J Mackey
      • [Bioperl-l] $_ assignment question   Josh Lauricha
      • [Bioperl-l] $_ assignment question   Paul Edlefsen
      • [Bioperl-l] $_ assignment question   Josh Lauricha
• [Bioperl-l] multiple inheritance   Christopher Cavnor
  • [Bioperl-l] multiple inheritance   Matthew Pocock
• [Bioperl-l] blastcl3   Nini1078 at aol.com
• [Bioperl-l] multiple inheritance   Nathan (Nat) Goodman
• [Bioperl-l] Panel add_track -label option does not work   Wes Barris
• [Bioperl-l] Errors generated from example code in HOW-TO section   Wes Barris
• [Bioperl-l] Report to Recipient(s)   QOLOTUS05 at genelogic.com

Last message date: Thu Jul 31 23:18:15 EST 2003
Archived on: Fri Aug 1 08:25:16 EST 2003

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