[Bioperl-l] Hello LocusLink!!!

[Heikki Lehvaslaiho]

Line,

Boulder is not really part of bioperl... 

The module to retrieve "NM_.*" sequences is Bio::DB::RefSeq. The
synopsis section shows you how to use it.

If you have a Locuslink entry, have a look at file t/LocusLink.t for
what can be done with them after reading them into sequence objects
using Bio::SeqIO. For example, it will show you haw SeqIO puts database
crossreferences into annotation objects of type 'dblink'. 

	-Heikki

On Wed, 2003-07-16 at 16:45, Line Neil wrote:
> I am trying to understand Boulder::LocusLink because it seams to be the 
> module that I need for my second step search: I obtained the accession 
> number (ex: NM_...) after submitting my queries to some blast;
>  From them, I would like to obtain the approved name, approved symbol, 
> the locus, the Unigene reference, the omim link (something like what is 
> given on the blast server L:Locus link informations but every query in 
> a table)
> 
> I need help to know if it is the right tool and where I can find some 
> more understandable  docs for my newby level!!
> 
> Thanks in advance again!
> 
> Line
> 
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     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
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