[Bioperl-l] Adding new sequence format to AlignIO module

[Heikki Lehvaslaiho]

Tulio,

The AlignIO format modules are all subclasses of Bio::AlignIO. They are
in directory bioperlroot/Bio/AlignIO and redefine two methods:
next_aln() and write_aln(). There are plenty of examples there, but feel
free to ask help.

	-Heikki

On Thu, 2003-07-24 at 18:09, tulio de Oliveira wrote:
> Dear all
>  

> I am current doing a lot of development in the Genetic Data Environment
>  (and old software that is basically a GUI interface for sequence
>  analysis). 

> How could I add a new format to the AlignIO module ?
>  

> I want to add the GDE format, but I can not find where you define the
>  formats in the Bioperl modules...

>  
> Thanks for any help :)
> tulio 
> 
> 
> 
> .................Tulio de Oliveira......................
> .            http://www.bioafrica.net                  .
> .Bioinformatics and Molecular Virology at Africa Centre.                   . 
> .Nelson Mandela School of Medicine - South Africa      .      
> .               tel: +27 31 260 4015                   .
> .               fax: +27 31 204 3601                   .   
> ........................................................
> 
> ---------------------------------
> Do you Yahoo!?
> Yahoo! SiteBuilder - Free, easy-to-use web site design software
> 
> ______________________________________________________________________
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________