[Bioperl-l] [NT] Patch Submission (was: Problem using StandAloneFasta about 80000 times...)

[Jonathan Barber]

On Thu, Jul 24, 2003 at 09:43:30AM -0400, Jason Stajich wrote:
> sounds like problems that people have had for StandAloneBlast in the past.
> I went through StandAloneBlast with as much of a fine tooth comb as I
> could bear and made sure filehandles and program handles were closed.
> You may have to do this in StandAloneFasta as I don't think it has had
> this type of attention. It should be submitted as a bug for someone to
> track down (desperately seeking volunteers to help with bug
> fixing/tracking down...)

On the subject of fixing bugs, what's the procedure for patch
submission, is it just to send unified diffs to this list?

Also, are there any coding standards in operation?

Finally, what's the latest CVS version to be checking out, is
bioperl-live the repository that people are working on ATM?

BTW the Wiki linked from the Bioperl home page returns a 404.

> Alternatively If you don't want to do this - can you write your
> program to generate the whole input file list for FASTA and then just run
> this as a single input to FASTA at the end?
> 
> -jason
-- 
Jon