[Bioperl-l] how to change the sequence of a Bio::Seq object

[Jason Stajich]

I guess it was just copy+pasted from Bio::SeqI.  The docs for
Bio::PrimarySeq (which Bio::Seq inherits from) describes the method
properly.  Bio::SeqI/Bio::PrimarySeqI documentation only describe the
methods as setters in case someone implements the method for a system
which is read-only.

The docs are updated now.

-j

On Thu, 3 Jul 2003, Peili Zhang wrote:

>
> >
> >$seq->seq($newsequencestring)
> >(remember we won't remap feature locations for you though)
> >
>
> Thanks, it works. however, the bioperl documentation for bioperl-1.2 says the
> seq method of Bio::Seq module takes no argument and returns the sequence of the
> object. so I thought it's only a getter but not a setter. is there a newer
> version of the documentation? if not, it'll be really nice to have the
> documentation updated.
>
> -Peili
>
> >
> >On Thu, 3 Jul 2003, Peili Zhang wrote:
> >
> >> Hi,
> >>
> >> how can I change the sequence and length of a Bio::Seq object while
> >> keeping everything else intact?
> >>
> >> thanks,
> >>
> >> Peili
> >> FlyBase-Harvard
> >>
> >> _______________________________________________
> >> Bioperl-l mailing list
> >> Bioperl-l at portal.open-bio.org
> >> http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >>
> >
> >--
> >Jason Stajich
> >Duke University
> >jason at cgt.mc.duke.edu
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu