[Bioperl-l] [NT] Patch Submission (was: Problem using StandAloneFasta about 80000 times...)

[Ewan Birney]

On Thu, 24 Jul 2003, Jonathan Barber wrote:

> On Thu, Jul 24, 2003 at 09:43:30AM -0400, Jason Stajich wrote:
> > sounds like problems that people have had for StandAloneBlast in the past.
> > I went through StandAloneBlast with as much of a fine tooth comb as I
> > could bear and made sure filehandles and program handles were closed.
> > You may have to do this in StandAloneFasta as I don't think it has had
> > this type of attention. It should be submitted as a bug for someone to
> > track down (desperately seeking volunteers to help with bug
> > fixing/tracking down...)
> 
> On the subject of fixing bugs, what's the procedure for patch
> submission, is it just to send unified diffs to this list?

that's ok, or sometimes just the whole module. By the time you submit your 
2nd or third patch you'll find that we'll be giving you cvs access.

> 
> Also, are there any coding standards in operation?
> 

rough and ready stuff in biodesign.pod

> Finally, what's the latest CVS version to be checking out, is
> bioperl-live the repository that people are working on ATM?
> 

Yup. 

> BTW the Wiki linked from the Bioperl home page returns a 404.
> 
> > Alternatively If you don't want to do this - can you write your
> > program to generate the whole input file list for FASTA and then just run
> > this as a single input to FASTA at the end?
> > 
> > -jason
> -- 
> Jon
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