[Bioperl-l] Bio::DB::GFF
Eley Greg
eley_greg at bah.com
Wed Jul 16 17:49:21 EDT 2003
I recently upgraded my system to RedHat 9 and reinstalled Bioperl. All
is well except for database access. When I run the Bio::DB::GFF tests,
they all fail with the following error:
t/BioDBGFF...................install_driver(mysql) failed: Can't load
'/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi/auto/DBD/mysql/mysql.so'
for module DBD::mysql:
/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi/auto/DBD/mysql/mysql.so:
undefined symbol: mysql_ssl_set at
/usr/lib/perl5/5.8.0/i386-linux-thread-multi/DynaLoader.pm line 229, <T>
line 6.
at (eval 11) line 3
Compilation failed in require at (eval 11) line 3, <T> line 6.
Perhaps a required shared library or dll isn't installed where expected
at blib/lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm line 140
t/BioDBGFF...................FAILED tests 1-116
Failed 116/116 tests, 0.00% okay
The mysql_ssl_set is a flag that can be set if mysql_ssl flag is set to
on. However, I have no idea how to change this or if there is an ssl
module that I installed that is causing the problem. Any help is
appreciated.
Thank you.
Greg Eley
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