[Bioperl-l] Bug in SearchIO in v 1.2.2

[Gary Williams, Tel 01223 494522]

I've had some trouble registering for Bugzilla, so please accept my
apologies for this bug report on the mailing list.

I've noticed in version 1.2.2 that the value of $result->query_length in
SearchIO when parsing Blast is always 0

e.g.

use Bio::SearchIO;

$searchio = new Bio::SearchIO (-format => 'blast',
                                -file   => $blast_report_file);
$result = $searchio->next_result;
print "query length=",$result->query_length, "\n";

I'm sorry, but I can't see where the error lies.

Regards,
Gary




-- 
Gary Williams               Tel: +44 1223 494522  Fax: +44 1223 494512
mailto:G.Williams at hgmp.mrc.ac.uk          http://www.hgmp.mrc.ac.uk/
Bioinformatics, MRC HGMP, Hinxton, Cambridge, CB10 1SB, UK