[Bioperl-l] Re: genbank chado loader or gff3 producer

[Scott Cain]

Lincoln,

I don't think so (though I hope Chris will correct me if I am wrong); it
his docs for Bio::SeqFeature::Tools::Unflattener, he indicates that it
should now be easier to create a GenBank to GFF3 converter, but I don't
think he actually created one.

Scott

On Thu, 2003-07-17 at 11:25, Lincoln Stein wrote:
> Hi Scott,
> 
> Chris Mungall just contributed a genbank to gff3 converter to Bioperl, 
> although I'm having trouble finding it in the repository right now.
> 
> Lincoln
> 
> On Wednesday 16 July 2003 04:14 pm, Scott Cain wrote:
> > Lincoln,
> >
> > As I was thinking about creating a genbank file loader for chado, it
> > occurred to me that it might be better to make a more general genbank to
> > gff3 converter, then make a gff3 loader for chado (a tool that I have
> > been planning on writing as well).  Does that sound reasonable to you?
> >
> > Scott
-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                         cain at cshl.org
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory