[Bioperl-l] parsing coded_by subfeature

Jack Chen chenn at cshl.edu
Sat Jul 19 22:10:56 EDT 2003


Hi All,

I'd like to retrieve nucleotide sequence for a give protein sequence. I
know that I could do it through coded_by subfeature, which can be rather
messy. Say, it could be one of the following formats

	 #AF264924.1:1749..>2110
         #AF264924.1:<254..1563
         #join(AY260053.1:497..545,AY260053.1:610..3342,
AY260053.1:3409..3750,AY260053.1:3810..4511, AY260053.1:4569..4960)

Is their a good and unified way to do it?

Thanks

Jack




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