[Bioperl-l] Bioperl-1.2.2 installation fail on Mac Os 10.2.6

[Jason Stajich]

What version of perl, did you upgrade your perl to 5.8.0 and then not
reinstall Storable?
http://www.macosxhints.com/article.php?story=20030510134717974
http://fink.sourceforge.net/faq/usage-fink.php#perl-undefined-symbol

On Thu, 24 Jul 2003, Shin Enomoto wrote:

> I am unable to install Bioperl-1.2.2. I get the message below after
> 'perl MakeFile.PL'. I have Bioperl-1.2.1 currently running.
>
> I have mysql 4 running on the system and answering yes to the question
> leads to attempt at connecting and then same error.
>
> Generated sub tests. go make show_tests to see available subtests
> Do you want to run the BioDBGFF tests (requires a mysql database) y/n
> [n]
>
> dyld: perl Undefined symbols:
> _bytes_to_utf8
> Trace/BPT trap
>
>
> If I answer yes to mysql test I get the following:
>
> Generated sub tests. go make show_tests to see available subtests
> Do you want to run the BioDBGFF tests (requires a mysql database) y/n
> [n] y
> Which database should I use for testing the mysql drivers? [test] yeast
> On which host is database yeast running (hostname, ip address or
> host:port) [localhost]
> User name for connecting to database yeast? [undef]
> Password for connecting to database yeast? [undef]
> Driver mysql is using the following settings for tests:
>      Database yeast
>      Host
>      DSN      DBI:mysql:database=yeast
>      User
>      Password
>
> dyld: perl Undefined symbols:
> _bytes_to_utf8
> Trace/BPT trap
>
>
> Shin Enomoto
> 295 ASLVM
> 1988 Fitch Ave
> St. Paul, MN 55108
>
> 612-625-7737
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu