[Bioperl-l] filtering output from HTMLResultWriter
Charles Hauser
chauser at duke.edu
Tue Jul 29 17:58:46 EDT 2003
Novice question here,
I'd like to spew out html pgs from blast results, but want to impose a
couple of cutoff criteria using:
- $hsp->length > xxx
- $hsp->percent_identity > yyyy
HTMLResultWriter method to_string has:
my @hsps = $hit->hsps;
the docs for HTMLResultWriter suggest:
$writer->filter('hsp', \&hsp_filter);
I am not clear on how to implement this.
?
my $writer = new Bio::SearchIO::Writer::HTMLResultWriter( length,%id );
$writer->filter('hsp', \&hsp_filter);
sub hsp_filter {
}
Charles
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