[Bioperl-l] process_sgd.PLS trouble

[Venky Nandagopal]

Hi,
I'm trying to set up a Bio::DB::GFF feature database for the SGD data.
I downloaded the chromosomal_feature.tab file at ftp://genome- 
ftp.stanford.edu/pub/yeast/data_download/chromosomal_feature/chromosomal_feature.tab 
 and ran process_sgd.PLS as instructed --

process_sgd.PLS chromosomal_feature.tab > yeast.gff.

I got this error message:
Strand logic is messed up at ./process_sgd.PLS line 69, <> line 6.

I looked at the script and it screams and dies when $stop<$start at line 
69.

So I modified the script to save away $_, the line being processed and 
print it out before dying and here it is:

ARS1001                        ARS     10      65      577             
S0028438               Autonomously Replicating Sequence        2002-12-16  
    2002-12-16


I'm not really sure what I should do to fix this -- any suggestions?

Venky


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