[Bioperl-l] SignalP bug in predict_protein_features?

[Shawn Hoon]

Good catch David,
	I've fixed it  and added your name to the Authors list.

cheers,

shawn

On Wednesday, July 2, 2003, at 02:14  PM, david.vilanova at urbanet.ch 
wrote:

> Hello,
> I was checking the Bio::Tools::Run::Signalp module and saw that in the 
> code (in
> the predict_protein_features) there are 2 different sizes for the 
> subseq
> depending on weather a sequence is passed or a file.
> I guess the size should be the same right (meaning 40 or 50) ?
>
>
>        if ($seq->length>50){
>
>          my $sub_seq = $seq->subseq(1, 50);
>          $seq->seq($sub_seq);
>        }
>
>
> while ( my $tmpseq = $in->next_seq() ) {
>                my $sub_seq = $tmpseq->subseq(1,40);
>
>                $tmpseq->seq($sub_seq);
>                $infile1 = $self->_writeSeqFile($tmpseq);
>
>          }
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>