[Bioperl-l] Using primer3

[Heikki Lehvaslaiho]

Shawn,

It would be great if you could work on primer3 wrapper/parser.

I am working on the Resriction modules and expect to do the first commit
any day now, so do not touch them.

Thanks,

	-Heikki



On Wed, 2003-07-09 at 09:32, Shawn Hoon wrote:
> On Tuesday, July 8, 2003, at 02:26  AM, Mike Muratet wrote:
> 
> > Greetings
> >
> > I'm trying to sort out running the primer3 methods in bioperl 1.2.1 
> > (the latest stable, isn't it?).
> >
> 
> bioperl 1.2.2 is just out available at:
> http://www.bioperl.org/DIST/bioperl-1.2.2.tar.gz
> 
> bioperl-run is available at:
> http://www.bioperl.org/DIST/bioperl-run-1.2.2.tar.gz
> 
> 
> > I see  by the README in Bio/Tools/Run that this is a separate branch, 
> > but I don't see at www.bioperl.org or CPAN where it can be downloaded. 
> > (There is no Run::Primer3 that I can see in the directory.)
> >
> > I've looked through the wikis and searched the web, but I can't figure 
> > out how to use it. I know it's a simple answer, could someone clue me 
> > in?
> >
> 
> Currently Primer3 has no wrapper in bioperl-run. However I managed to 
> dig up an April Email by Rob
> that has a link to some modules that he has written for working with 
> Primer3.
> 
> http://www.salmonella.org/bioperl/primer3_v0.3.tgz
> 
> Rob I can integrate this with bioperl-run if its okay with you.
> Are you still having problems with the WrapperBase I/O handling?
> 
> cheers,
> 
> shawn
> .
> 
> > Thanks
> >
> > Mike_______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at portal.open-bio.org
> > http://portal.open-bio.org/mailman/listinfo/bioperl-l
> 
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-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
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