[Bioperl-l] Bio::Graphics - roblem with heterogeneous_segments
Dmitri Bichko
dbichko at genpathpharma.com
Tue Jul 22 19:36:45 EDT 2003
Hello,
I am trying to render a BLAST result and color the segments according to
the raw score. Rather than using a gradient, however, I need to use
four distinct colors. I thought I could do this with
heterogeneous_segments. As a test:
my $track = $panel->add_track(-glyph =>
'heterogeneous_segments',
-label => 0,
-connector =>
'dashed',
-sort_order =>
'high_score',
-height => 3,
-bgcolor =>
'green',
-test_color =>
'blue',
);
And to create the features:
my $feature = Bio::SeqFeature::Generic->new(
-score =>
$hit->raw_score,
-seq_id =>
$hit->name,
-source
=> 'test',
);
All the segments are just colored with the default bgcolor, the
source_color seems to have no effect; am I missing something?
Thanks,
Dmitri
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