[Bioperl-l] SignalP bug in predict_protein_features?

[david.vilanova at urbanet.ch]

Hello,
I was checking the Bio::Tools::Run::Signalp module and saw that in the code (in 
the predict_protein_features) there are 2 different sizes for the subseq 
depending on weather a sequence is passed or a file.
I guess the size should be the same right (meaning 40 or 50) ?


       if ($seq->length>50){
           
         my $sub_seq = $seq->subseq(1, 50);
         $seq->seq($sub_seq);
       }
       

while ( my $tmpseq = $in->next_seq() ) {
               my $sub_seq = $tmpseq->subseq(1,40);

               $tmpseq->seq($sub_seq);
               $infile1 = $self->_writeSeqFile($tmpseq);  
        
         }