2002-August Archives by Thread

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Starting: Thu Aug 1 02:30:11 2002
Ending: Sat Aug 31 23:57:42 2002
Messages: 456

• [Bioperl-l] longest ORF   Dan Kortschak
  • [Bioperl-l] longest ORF   Brian Osborne
• [Bioperl-l] Wrapping logs from Bioinformati analysis   Marco Aurelio Valtas Cunha
• [Bioperl-l] =?gb2312?Q?How_to_set_proxy_information_in_getGenBank.pl=3F?=   Wei Yichun
• [Bioperl-l] BOSC2002 blog site   KATAYAMA Toshiaki
• [Bioperl-l] How does bioperl handle Genbank sequence records? [buggy behavior?]   Danny Yoo
  • [Bioperl-l] How does bioperl handle Genbank sequence records? [buggy behavior?]   Hilmar Lapp
• [Bioperl-l] How_to_set_proxy_information_in_getGenBank.pl   Peter Kos
  • [Bioperl-l] How_to_set_proxy_information_in_getGenBank.pl   Charles Plessy
• [Bioperl-l] funny GI bug   Elia Stupka
• [Bioperl-l] bug, again VERSION without version number...   Elia Stupka
• [Bioperl-l] GI   Elia Stupka
• [Bioperl-l] Phenotype interface and OMIMentry   Hilmar Lapp
• [Bioperl-l] Bio::Cluster   Andreas Matern
  • [Bioperl-l] Bio::Cluster   Andrew Macgregor
    • [Bioperl-l] Bio::Cluster   Hilmar Lapp
      • [Bioperl-l] Bio::Cluster   Andrew Macgregor
      • [Bioperl-l] Bio::Cluster   Hilmar Lapp
      • [Bioperl-l] Bio::Cluster   Andrew Macgregor
• [Bioperl-l] fasta header   Alexander Kozik
  • [Bioperl-l] fasta header   Brian Desany
    • [Bioperl-l] fasta header   Ewan Birney
• [Bioperl-l] How_to_set_proxy_information_in_getGenBank.pl   Peter Kos
• [Bioperl-l] "invalid e-mail address" bug   Peter Kos
  • [Bioperl-l] "invalid e-mail address" bug   Brian Desany
  • [Bioperl-l] "invalid e-mail address" bug   Michael Muratet
    • [Bioperl-l] "invalid e-mail address" bug   Jason Stajich
• [Bioperl-l] module proposal Bio::DB::PDB   Jaime.Prilusky@weizmann.ac.il
  • [Bioperl-l] module proposal Bio::DB::PDB   Ewan Birney
    • [Bioperl-l] module proposal Bio::DB::PDB   Hilmar Lapp
      • [Bioperl-l] module proposal Bio::DB::PDB   Steve Chervitz
      • [Bioperl-l] module proposal Bio::DB::PDB   Hilmar Lapp
    • [Bioperl-l] module proposal Bio::DB::PDB   Jaime.Prilusky@weizmann.ac.il
  • [Bioperl-l] module proposal Bio::DB::PDB   Kris Boulez
• [Bioperl-l] web interface parsers   Tania Oh Wei Ling
  • [Bioperl-l] web interface parsers   Elia Stupka
• [Bioperl-l] get Seq by Acc - needs a start and end (what format is needed??)   Benjamin Breu
• [Bioperl-l] 尊敬的新老客户：您好!   web
• [Bioperl-l] get Seq by Acc - needs a start and end (what format is needed??)   Wiepert, Mathieu
• [Bioperl-l] GenBank to GFF conversion tool?   Jay Hesselberth
  • [Bioperl-l] GenBank to GFF conversion tool?   Ewan Birney
• [Bioperl-l] *major* error in genbank parser or am i just insane?   Chris Mungall
  • [Bioperl-l] *major* error in genbank parser or am i just insane?   Jason Stajich
    • [Bioperl-l] *major* error in genbank parser or am i just insane?   Chris Mungall
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Hilmar Lapp
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Elia Stupka
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Chris Mungall
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Elia Stupka
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Chris Mungall
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Elia Stupka
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Hilmar Lapp
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Hilmar Lapp
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Chris Mungall
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Hilmar Lapp
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Ewan Birney
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Lincoln Stein
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Ewan Birney
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Ewan Birney
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Jason Stajich
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Hilmar Lapp
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Ewan Birney
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Ewan Birney
• [Bioperl-l] Does pWS work with DNA sequence?   Shukui Guan
  • [Bioperl-l] Does pWS work with DNA sequence?   Brian Osborne
  • [Bioperl-l] Does pWS work with DNA sequence?   Jason Stajich
• [Bioperl-l] line too long...   Elia Stupka
• [Bioperl-l] (no subject)   Benjamin Breu
  • [Bioperl-l] (no subject)   Brian Osborne
  • [Bioperl-l] (no subject)   Jason Stajich
• [Bioperl-l] get_stream_by_batch with an invalid ac   michael
  • [Bioperl-l] get_stream_by_batch with an invalid ac   Mick Watson
    • [Bioperl-l] get_stream_by_batch with an invalid ac   michael
      • [Bioperl-l] get_stream_by_batch with an invalid ac   Lincoln Stein
      • [Bioperl-l] get_stream_by_batch with an invalid ac   Ewan Birney
    • [Bioperl-l] get_stream_by_batch with an invalid ac   Lincoln Stein
• [Bioperl-l] run-time loading of modules   Hilmar Lapp
• [Bioperl-l] *major* error in genbank parser or am i just insane? (fwd)   Danny Yoo
  • [Bioperl-l] cross-project parser fun   Jason Stajich
• [Bioperl-l] Hello   bioinfo@flrtn-2-m2-60.vnnyca.adelphia.net
• [Bioperl-l] Bio::SeqIO; seq->desc() gives back too (!!!) full header   Benjamin Breu
  • [Bioperl-l] Bio::SeqIO; seq->desc() gives back too (!!!) full header   Jason Stajich
    • [Bioperl-l] Bio::SeqIO; seq->desc() gives back too (!!!) full header   Malcolm Cook
• [Bioperl-l] *major* error in genbank parser or am i just insane?   Hilmar Lapp
  • [Bioperl-l] *major* error in genbank parser or am i just insane?   Ewan Birney
• [Bioperl-l] *major* error in genbank parser or am i just insane?   Hilmar Lapp
  • [Bioperl-l] *major* error in genbank parser or am i just insane?   Jason Stajich
    • [Bioperl-l] location parsing refactored   Hilmar Lapp
      • [Bioperl-l] location parsing refactored   Ewan Birney
      • [Bioperl-l] location parsing refactored   Hilmar Lapp
• [Bioperl-l] unsubscribe Bioperl-l   ydzhang@iastate.edu
• [Bioperl-l] Re: SearchIO and GCG   Jason Stajich
• [Bioperl-l] Retrieving sequence from local blast database   Jason Stajich
• [Bioperl-l] Fwd: about scf file handling   Jason Stajich
• [Bioperl-l] primer3, SeqIO::primer3, PrimedSeq, and SeqFeature::Primer   Chad Matsalla
  • [Bioperl-l] primer3, SeqIO::primer3, PrimedSeq, and SeqFeature::Primer   Ewan Birney
    • [Bioperl-l] primer3, SeqIO::primer3, PrimedSeq, and SeqFeature::Primer   Chad Matsalla
      • [Bioperl-l] primer3, SeqIO::primer3, PrimedSeq, and SeqFeature::Primer   Elia Stupka
      • [Bioperl-l] primer3, SeqIO::primer3, PrimedSeq, and SeqFeature::Primer   Ewan Birney
      • [Bioperl-l] primer3, SeqIO::primer3, PrimedSeq, and SeqFeature::Primer   Chad Matsalla
      • [Bioperl-l] primer3, SeqIO::primer3, PrimedSeq, and SeqFeature::Primer   Hilmar Lapp
      • [Bioperl-l] primer3, SeqIO::primer3, PrimedSeq, and SeqFeature::Primer   Elia Stupka
      • [Bioperl-l] SeqFeatureIO   Hilmar Lapp
• [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Brian King
  • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Ewan Birney
    • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Brian King
      • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Ewan Birney
      • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Lincoln Stein
      • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Chris Mungall
      • [Bioperl-l] *major* error in genbank parser or am i just insane?   Brian King
• [Bioperl-l] RE: SearchIO and GCG   Peter Kos
  • [Bioperl-l] RE: SearchIO and GCG   Jason Stajich
• [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Brian King
  • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Lincoln Stein
    • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Brian King
• [Bioperl-l] BLAST parameters   P B
  • [Bioperl-l] BLAST parameters   Brian Osborne
• [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Lin, Xiaoying J.
  • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Francis Ouellette
    • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Lincoln Stein
      • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Francis Ouellette
  • [Bioperl-l] Re: *major* error in genbank parser or am i just insane?   Lincoln Stein
• [Bioperl-l] BLAST parameters   P B
  • [Bioperl-l] BLAST parameters   Jason Stajich
    • [Bioperl-l] Remote BLASTing (was BLAST parameters)   Jason Stajich
• [Bioperl-l] Re: How to retrieve the unigene number   P B
  • [Bioperl-l] Re: How to retrieve the unigene number   Jason Stajich
• [Bioperl-l] *major* error in genbank parser or am i just insane?   Hilmar Lapp
• [Bioperl-l] CDS/exon was Re: *major* error in genbank pars er or am i just insane?   Lin, Xiaoying J.
• [Bioperl-l] BLAST parameters   Wiepert, Mathieu
• [Bioperl-l] BLAST parameters   Peter Kos
  • [Bioperl-l] BLAST parameters   Paul Gordon
• [Bioperl-l] BLAST parameters   P B
• [Bioperl-l] BOSC take home msgs   Jason Stajich
  • [Bioperl-l] BOSC take home msgs   Elia Stupka
  • [Bioperl-l] BOSC take home msgs   Brian Osborne
• [Bioperl-l] bioperl-db MANIFEST is out of sync   Chris Dagdigian
  • [Bioperl-l] bioperl-db MANIFEST is out of sync   Hilmar Lapp
• [Bioperl-l] biosql primary key generation   Hilmar Lapp
  • [Bioperl-l] biosql primary key generation   Todd Richmond
    • [Bioperl-l] biosql primary key generation   Hilmar Lapp
      • [Open-bio-l] Re: [Bioperl-l] biosql primary key generation   Chris Mungall
      • [Open-bio-l] Re: [Bioperl-l] biosql primary key generation   Hilmar Lapp
• [Bioperl-l] Memory-mapped sequence object   Jeremy Semeiks
  • [Bioperl-l] Memory-mapped sequence object   Jason Stajich
  • [Bioperl-l] Memory-mapped sequence object   Jason Stajich
    • [Bioperl-l] Memory-mapped sequence object   Jeremy Semeiks
      • [Bioperl-l] Memory-mapped sequence object   Lincoln Stein
• [Bioperl-l] HOWTOs signup   Jason Stajich
  • [Bioperl-l] HOWTOs signup   Elia Stupka
  • [Bioperl-l] HOWTOs signup   Todd Richmond
• [Bioperl-l] Does latest Bundle::BioPerl contan Text::Shellwords?   Brian Osborne
  • [Bioperl-l] Does latest Bundle::BioPerl contan Text::Shellwords?   Lincoln Stein
    • [Bioperl-l] Does latest Bundle::BioPerl contan Text::Shellwords?   Brian Osborne
• [Bioperl-l] Does latest Bundle::BioPerl contan Text::Shellwords?   Hilmar Lapp
  • [Bioperl-l] Does latest Bundle::BioPerl contan Text::Shellwords?   chris dagdigian
    • [Bioperl-l] Does latest Bundle::BioPerl contan Text::Shellwords?   Jason Stajich
      • [Bioperl-l] XML parsing recommendations in BioPerl?   Charles Tilford
      • [Bioperl-l] Re: XML parsing recommendations in BioPerl?   Jason Stajich
      • [Bioperl-l] Re: XML parsing recommendations in BioPerl?   Lincoln Stein
    • [Bioperl-l] Does latest Bundle::BioPerl contan Text::Shellwords?   Brian Osborne
• [Bioperl-l] New enzymes for RestrictionEnzyme.pm   Ryan Brinkman
  • [Bioperl-l] New enzymes for RestrictionEnzyme.pm   Brian Osborne
    • [Bioperl-l] New enzymes for RestrictionEnzyme.pm   Steve Chervitz
• [Bioperl-l] Microarray ANOVA module   Robinson, Peter
  • [Bioperl-l] Microarray ANOVA module   Jaime.Prilusky@weizmann.ac.il
    • [Bioperl-l] Microarray ANOVA module   Ewan Birney
      • [Bioperl-l] Microarray ANOVA module   Alvis Brazma
  • [Bioperl-l] Microarray ANOVA module   Brian Osborne
• [Bioperl-l] Bio::Tools::Blast.pm & unacceptable memory usage   Charles Hauser
  • [Bioperl-l] Bio::Tools::Blast.pm & unacceptable memory usage   Jason Stajich
• [Bioperl-l] HSP length/percent identity bug?   Lu, Hong
• [Bioperl-l] indexing quality files   Andy Nunberg
• [Bioperl-l] New enzymes for RestrictionEnzyme.pm   Ryan Brinkman
  • [Bioperl-l] New enzymes for RestrictionEnzyme.pm   Brian Osborne
• [Bioperl-l] release   Jason Stajich
  • [Bioperl-l] release   Elia Stupka
• [Bioperl-l] parsing blastx reports w/ SearchIO & SearchIO::Writer::HSPTableWriter ?   Charles Hauser
• [Bioperl-l] deprecated modules   Jason Stajich
  • [Bioperl-l] deprecated modules   Steve Chervitz
    • [Bioperl-l] deprecated modules   Jason Stajich
• [Bioperl-l] deprecated modules   Hilmar Lapp
  • [Bioperl-l] deprecated modules   Jason Stajich
    • [Bioperl-l] deprecated modules   Hilmar Lapp
    • [Bioperl-l] deprecated modules   Jason Stajich
      • [Bioperl-l] deprecated modules   Hilmar Lapp
• [Bioperl-l] release numbers   Jason Stajich
  • [Bioperl-l] release numbers   Elia Stupka
• [Bioperl-l] 1.1 tarballs   Jason Stajich
• [Bioperl-l] release numbers   Hilmar Lapp
  • [Bioperl-l] release numbers   Chris Mungall
    • [Bioperl-l] release numbers   Matthew Pocock
    • [Bioperl-l] release numbers   Jason Stajich
      • [Bioperl-l] release numbers   Elia Stupka
      • [Bioperl-l] release numbers   Jason Stajich
      • [Bioperl-l] release numbers   Elia Stupka
  • [Bioperl-l] release numbers   Jason Stajich
  • [Bioperl-l] release numbers   Elia Stupka
• [Bioperl-l] deprecated modules   Peter Kos
  • [Bioperl-l] deprecated modules   Jason Stajich
• [Bioperl-l] RE: Bioperl-l digest, Vol 1 #854 - 10 msgs   Martin Lague
  • [Bioperl-l] RE: Bioperl-l digest, Vol 1 #854 - 10 msgs   Eley Greg
  • [Bioperl-l] RE: Bioperl-l digest, Vol 1 #854 - 10 msgs   Ewan Birney
• [Bioperl-l] Re: No joins   Ewan Birney
  • [Bioperl-l] Re: No joins   Brian King
    • [Bioperl-l] Re: No joins   Matthew Pocock
    • [Bioperl-l] Re: No joins   Hilmar Lapp
  • [Bioperl-l] Re: No joins   Lincoln Stein
    • [Bioperl-l] Re: No joins   Ewan Birney
    • [Bioperl-l] Re: No joins   Matthew Pocock
      • [Bioperl-l] Re: No joins   Andrew Dalke
      • [Bioperl-l] Re: No joins   Lincoln Stein
      • [Bioperl-l] Re: No joins   Jason Stajich
• [Bioperl-l] release numbers   Hilmar Lapp
  • [Bioperl-l] release numbers   Elia Stupka
  • [Bioperl-l] release numbers   Jason Stajich
    • [Bioperl-l] release numbers   Elia Stupka
      • [Bioperl-l] release numbers   Hilmar Lapp
      • [Bioperl-l] release numbers   Elia Stupka
• [Bioperl-l] What's the best object to store sequence assembly information?   David Yerushalmi
  • [Bioperl-l] What's the best object to store sequence assembly information?   Elia Stupka
    • [Bioperl-l] What's the best object to store sequence assembly information?   Allen Day
      • [Bioperl-l] What's the best object to store sequence assembly information?   Elia Stupka
  • [Bioperl-l] What's the best object to store sequence assembly information?   Heikki Lehvaslaiho
• [Bioperl-l] [Bioperl-l]: Bio::SearchIO Blast descriptions mutilated   Martin Schenker
• [Bioperl-l] BLAT Parser   Marco Aurelio Valtas Cunha
• [Bioperl-l] Re: No joins   nkuipers
  • [Bioperl-l] Re: No joins   Andrew Dalke
• [Bioperl-l] Re: No joins   nkuipers
• [Bioperl-l] Re: No joins   Hilmar Lapp
• [Bioperl-l] Stumped by libxml-perl make error during Bundle::BioPerl installation   Gordon D. Pusch
  • [Bioperl-l] Stumped by libxml-perl make error during Bundle::BioPerl installation   Jason Stajich
• [Bioperl-l] Stumped by libxml-perl make error during Bundle::BioPerl installation   Neill White
• [Bioperl-l] deprecated modules   Peter Kos
• [Bioperl-l] Indexing qual files, Return of The Indexers   Andy Nunberg
  • [Bioperl-l] Indexing qual files, Return of The Indexers   Hilmar Lapp
• [Bioperl-l] BLAST Parsing Bug?   Paul Boutros
  • [Bioperl-l] BLAST Parsing Bug?   Andreas Matern
  • [Bioperl-l] BLAST Parsing Bug?   Jason Stajich
    • [Bioperl-l] BLAST Parsing Bug?   Paul Boutros
      • [Bioperl-l] BLAST Parsing Bug?   Jason Stajich
    • [Bioperl-l] BLAST Parsing Bug?   Paul Boutros
      • [Bioperl-l] BLAST Parsing Bug?   Jason Stajich
      • [Bioperl-l] BLAST Parsing Bug?   Paul Boutros
• [Bioperl-l] IO.pm bug?   Paul Boutros
  • [Bioperl-l] IO.pm bug?   Andreas Matern
  • [Bioperl-l] IO.pm bug?   Jason Stajich
• [Bioperl-l] Re: IO.pm Bug?   Paul Boutros
• [Bioperl-l] StandAloneBlast Bug?   Paul Boutros
  • [Bioperl-l] StandAloneBlast Bug?   Jason Stajich
• [Bioperl-l] bioperl-db tests   Hilmar Lapp
  • [Bioperl-l] bioperl-db tests   Shawn
    • [Bioperl-l] bioperl-db tests   Hilmar Lapp
      • [Bioperl-l] bioperl-db tests   Elia Stupka
• [Bioperl-l] Re: IO.pm Bug? (Martin Lercher)   Martin Lercher
• [Bioperl-l] starting out with Boulder   skw p
  • [Bioperl-l] starting out with Boulder   Lincoln Stein
    • [Bioperl-l] starting out with Boulder   Jason Stajich
      • [Bioperl-l] starting out with Boulder   Lincoln Stein
      • [Bioperl-l] starting out with Boulder   Jason Stajich
      • [Bioperl-l] starting out with Boulder   Lincoln Stein
      • [Bioperl-l] starting out with Boulder   Ewan Birney
      • [Bioperl-l] starting out with Boulder   Steve Chervitz
      • [Bioperl-l] starting out with Boulder   Ewan Birney
      • [Bioperl-l] starting out with Boulder   Jason Stajich
      • [Bioperl-l] starting out with Boulder   Brian Osborne
  • [Bioperl-l] starting out with Boulder   Brian Osborne
  • [Bioperl-l] starting out with Boulder   Brian Osborne
• [Bioperl-l] question about the nature of bioperl   nkuipers
  • [Bioperl-l] question about the nature of bioperl   Ewan Birney
    • [Bioperl-l] question about the nature of bioperl   mwilkinson@gene.pbi.nrc.ca
  • [Bioperl-l] question about the nature of bioperl   Chris Mungall
    • [Bioperl-l] question about the nature of bioperl   Ewan Birney
  • [Bioperl-l] question about the nature of bioperl   Brian Osborne
• [Bioperl-l] bioperl jitterbug tracking has been broken (now fixed)   chris dagdigian
• [Bioperl-l] howtos...   Ewan Birney
  • [Bioperl-l] howtos...   Kris Boulez
    • [Bioperl-l] howtos...   Allen Day
      • [Bioperl-l] howtos...   Aaron J Mackey
    • [Bioperl-l] howtos...   Jason Stajich
      • [Bioperl-l] howtos...   Lincoln Stein
• [Bioperl-l] question about the nature of bioperl   nkuipers
  • [Bioperl-l] question about the nature of bioperl   Chris Mungall
    • [Bioperl-l] question about the nature of bioperl   mwilkinson@gene.pbi.nrc.ca
  • [Bioperl-l] question about the nature of bioperl   Ewan Birney
• [Bioperl-l] question about the nature of bioperl   nkuipers
  • [Bioperl-l] question about the nature of bioperl   Allen Day
  • [Bioperl-l] question about the nature of bioperl   Chris Mungall
    • [Bioperl-l] question about the nature of bioperl   Allen Day
    • [Bioperl-l] question about the nature of bioperl   Elia Stupka
      • [Bioperl-l] question about the nature of bioperl   Chris Mungall
      • [Bioperl-l] question about the nature of bioperl   Elia Stupka
      • [Bioperl-l] question about the nature of bioperl   Elia Stupka
• [Bioperl-l] bioperl-db tests   Shawn
• [Bioperl-l] Re: BLAST parsers   Neil Saunders
  • [Bioperl-l] Re: BLAST parsers   Brian Osborne
• [Bioperl-l] question about the nature of bioperl   nkuipers
• [Bioperl-l] Fwd: BioSQL mailing list   Hilmar Lapp
  • [Bioperl-l] Re: [Open-bio-l] Fwd: BioSQL mailing list   Ewan Birney
  • [Bioperl-l] Fwd: BioSQL mailing list   Elia Stupka
    • [Open-bio-l] Re: [Bioperl-l] Fwd: BioSQL mailing list   Ewan Birney
      • [Open-bio-l] Re: [Bioperl-l] Fwd: BioSQL mailing list   Elia Stupka
• [Bioperl-l] question about the nature of bioperl   Peter Kos
• [Bioperl-l] Bioperl is a Billy Bragg song   Ewan Birney
• [Bioperl-l] Pipeline stuff   Peter Kos
• [Bioperl-l] compilation of bioperl-ext with perl 5.004 (IRIX)   Andrea Schafferhans
  • [Bioperl-l] compilation of bioperl-ext with perl 5.004 (IRIX)   Tim Bunce
• [Bioperl-l] question about the nature of bioperl   Wiepert, Mathieu
• [Bioperl-l] BTW...   Brian Osborne
• [Bioperl-l] a quick note   nkuipers
• [Bioperl-l] question about the nature of bioperl && [Bioperl-l] howtos...   darin.m.london@gsk.com
• [Bioperl-l] sim4 parser?   Chris Mungall
  • [Bioperl-l] sim4 parser?   Chris Mungall
    • [Bioperl-l] sim4 parser?   Hilmar Lapp
      • [Bioperl-l] sim4 parser?   Jason Stajich
      • [Bioperl-l] sim4 parser?   Hilmar Lapp
    • [Bioperl-l] sim4 parser?   Ewan Birney
• [Bioperl-l] Your driver for 1.2   Ewan Birney
  • [Bioperl-l] Your driver for 1.2   Kris Boulez
• [Bioperl-l] GenericHit vs. BlastHit   Paul Boutros
  • [Bioperl-l] GenericHit vs. BlastHit   Jason Stajich
    • [Bioperl-l] GenericHit vs. BlastHit   Paul Boutros
• [Bioperl-l] 1.1 core and run released   Jason Stajich
  • [Bioperl-l] 1.1 core and run released   Elia Stupka
  • [Bioperl-l] 1.1 core and run released   Catherine Letondal
    • [Bioperl-l] 1.1 core and run released   shawnh@worf.fugu-sg.org
• [Bioperl-l] Seq error/RemoteBlast question   Wiepert, Mathieu
• [Bioperl-l] load_seqdatabase.pl and 'each_Location' method   Dan Swan
  • [Bioperl-l] load_seqdatabase.pl and 'each_Location' method   chris dagdigian
• [Bioperl-l] Tag in feature not written correctly   Michael Muratet
  • [Bioperl-l] Tag in feature not written correctly   Ewan Birney
• [Bioperl-l] load_seqdatabase.pl and 'each_Location' method   Hilmar Lapp
• [Bioperl-l] Tag in feature not written correctly   Hilmar Lapp
• [Bioperl-l] biosql for oracle   Emig, Robin
• [Bioperl-l] Bio::SeqIO::fasta.pm   Wiepert, Mathieu
• [Bioperl-l] Bio::SeqIO::fasta.pm   Hilmar Lapp
• FW: [Bioperl-l] Bio::SeqIO::fasta.pm   Wiepert, Mathieu
• [Bioperl-l] Bio::SeqIO::fasta.pm   Hilmar Lapp
  • [Bioperl-l] Bio::SeqIO::fasta.pm   Lincoln Stein
• [Bioperl-l] Re: [Bioperl-pipeline] Requirements for pipeline installation (fwd)   Elia Stupka
  • [Bioperl-l] Re: [Bioperl-pipeline] Requirements for pipeline installation (fwd)   Jason Stajich
    • [Bioperl-l] Re: [Bioperl-pipeline] Requirements for pipeline installation (fwd)   Elia Stupka
• [Bioperl-l] Re: No joins   Brian King
• [Bioperl-l] microarrays and matrices   Allen Day
• [Bioperl-l] makefile on alpha   Elia Stupka
  • [Bioperl-l] makefile on alpha   Jason Stajich
    • [Bioperl-l] makefile on alpha   Elia Stupka
    • [Bioperl-l] makefile on alpha   Elia Stupka
• [Bioperl-l] ignore the last sentence   Elia Stupka
• [Bioperl-l] fasta format   William R. Pearson
• [Bioperl-l] Bio::SeqIO::fasta.pm   nkuipers
• [Bioperl-l] microarrays and matrices   nkuipers
• [Bioperl-l] fasta format   Wiepert, Mathieu
  • [Bioperl-l] fasta format   Paul Gordon
    • [Bioperl-l] fasta format   Matthew Pocock
      • [Bioperl-l] fasta format   Aaron J Mackey
  • [Bioperl-l] fasta format   Lincoln Stein
    • [Bioperl-l] fasta format   Lincoln Stein
• [Bioperl-l] Scimagix here   Esther Flores
• [Bioperl-l] Discount Tobacco   Sales Department
• [Bioperl-l] ht://dig setup   Jason Stajich
  • [Bioperl-l] Re: ht://dig setup   Jason Stajich
• [Bioperl-l] swissprot under mysql   David Guzman
  • [Bioperl-l] swissprot under mysql   Chris Mungall
    • [Bioperl-l] scripts/ and examples/ are merged   Brian Osborne
      • [Bioperl-l] scripts/ and examples/ are merged   Lincoln Stein
      • [Bioperl-l] scripts/ and examples/ are merged   Brian Osborne
      • [Bioperl-l] scripts/ and examples/ are merged   Kris Boulez
• [Bioperl-l] Refseq not accessible- EBI down?   Stefan Kirov
• [Bioperl-l] Smith-Waterman for DNA seq in bioperl?   Yee Man
  • [Bioperl-l] Smith-Waterman for DNA seq in bioperl?   Jason Stajich
    • [Bioperl-l] Smith-Waterman for DNA seq in bioperl?   Yee Man
• [Bioperl-l] Bio::SeqIO::fasta.pm   Peter Kos
• [Bioperl-l] Parsing Blastcl3 results   bioperl tester
• [Bioperl-l] genewise runnable   Jason Stajich
  • [Bioperl-l] genewise runnable   shawnh@worf.fugu-sg.org
    • [Bioperl-l] genewise runnable   Jason Stajich
• [Bioperl-l] Re: Amino Acid Codes   Aaron J Mackey
• [Bioperl-l] fasta format   Wiepert, Mathieu
• [Bioperl-l] fasta format   Hilmar Lapp
• [Bioperl-l] fasta format   Hilmar Lapp
• [Bioperl-l] fasta format   Wiepert, Mathieu
  • [Bioperl-l] Where to place supplementary info for HOWTOs   Lincoln Stein
    • [Bioperl-l] Where to place supplementary info for HOWTOs   Jason Stajich
• [Bioperl-l] Docbook   Lincoln Stein
• [Bioperl-l] simplealign, prediction parsers   Richard Adams
• [Bioperl-l] Tag handling on SeqFeature::Generic   Marco Aurelio Valtas Cunha
  • [Bioperl-l] Tag handling on SeqFeature::Generic   Jason Stajich
    • [Bioperl-l] Tag handling on SeqFeature::Generic   Marco Aurelio Valtas Cunha
      • [Bioperl-l] Tag handling on SeqFeature::Generic   Jason Stajich
      • [Bioperl-l] Tag handling on SeqFeature::Generic   Marco Aurelio Valtas Cunha
      • [Bioperl-l] Tag handling on SeqFeature::Generic   Lincoln Stein
      • [Bioperl-l] Tag handling on SeqFeature::Generic   Marco Aurelio Valtas Cunha
• [Bioperl-l] gi number retrieval   Ming Chen
  • [Bioperl-l] gi number retrieval   Jason Stajich
• [Bioperl-l] (no subject)   theerthala sarma
  • [Bioperl-l] (no subject)   Brian Osborne
  • [Bioperl-l] (no subject)   Jason Stajich
• [Bioperl-l] RedHat and BioPerl   Henrik Nilsson
  • [Bioperl-l] RedHat and BioPerl   Brian Osborne
  • [Bioperl-l] RedHat and BioPerl   Dinakar Desai
• [Bioperl-l] Tag handling on SeqFeature::Generic   Hilmar Lapp
  • [Bioperl-l] Tag handling on SeqFeature::Generic   Marco Aurelio Valtas Cunha
  • [Bioperl-l] Tag handling on SeqFeature::Generic   Marco Aurelio Valtas Cunha
    • [Bioperl-l] Tag handling on SeqFeature::Generic   Lincoln Stein
• [Bioperl-l] OntologyTermI   Hilmar Lapp
  • [Bioperl-l] OntologyTermI   Lincoln Stein
    • [Bioperl-l] OntologyTermI   Matthew Pocock
      • [Bioperl-l] OntologyTermI   Lincoln Stein
      • [Bioperl-l] OntologyTermI   Ewan Birney
      • [Bioperl-l] OntologyTermI   Lincoln Stein
      • [Bioperl-l] OntologyTermI   Kris Boulez
    • [Bioperl-l] OntologyTermI   Ewan Birney
  • [Bioperl-l] Re: OntologyTermI   Ewan Birney
• [Bioperl-l] BioPerl 1.1.0 windows installation beta   Martin Lague
• [Bioperl-l] Tag handling on SeqFeature::Generic   Hilmar Lapp
• [Bioperl-l] SSR electronic searches   Josh Udall
  • [Bioperl-l] SSR electronic searches   Elia Stupka
  • [Bioperl-l] SSR electronic searches   Elia Stupka
• [Bioperl-l] microarrays and matrices   Hilmar Lapp
  • [Bioperl-l] microarrays and matrices   Allen Day
• [Bioperl-l] swissprot under mysql   Hilmar Lapp
  • [Bioperl-l] swissprot under mysql   David Guzman
• [Bioperl-l] Namespace issue   Guillaume Rousse
• [Bioperl-l] estwisedb   Mick Watson
  • [Bioperl-l] estwisedb   Ewan Birney
    • [Bioperl-l] Framshifts in alignments ... ?   Aaron J Mackey
      • [Bioperl-l] Re: Framshifts in alignments ... ?   Ewan Birney
• [Bioperl-l] FTLocationFactory.pm make test error   Wiepert, Mathieu
• [Bioperl-l] emboss paring bug   Jason Stajich
• [Bioperl-l] bioperl application   Damien Mattei
• [Bioperl-l] ECnumber   Chris Zmasek
• [Bioperl-l] RE: FTLocationFactory causes lots of test failures?   Hilmar Lapp
• [Bioperl-l] Creating FASTA library.   Martin Hirst
  • [Bioperl-l] Creating FASTA library.   Jason Stajich
  • [Bioperl-l] Creating FASTA library.   Ewan Birney
    • [Bioperl-l] Creating FASTA library.   Jean-Jack Riethoven
    • [Bioperl-l] Creating FASTA library.   Robert Citek
• [Bioperl-l] sub_SeqFeature written   Michael Muratet
  • [Bioperl-l] sub_SeqFeature written   Ewan Birney
    • [Bioperl-l] sub_SeqFeature written   Hilmar Lapp
      • [Bioperl-l] sub_SeqFeature written   Ewan Birney
      • [Bioperl-l] sub_SeqFeature written   Hilmar Lapp
• [Bioperl-l] Bio::Perl updates; Hmmer tests failing; Exception failing   Ewan Birney
  • [Bioperl-l] Bio::Perl updates; Hmmer tests failing; Exception failing   Jason Stajich
  • [Bioperl-l] Bio::Perl updates; Hmmer tests failing; Exception failing   Steve Chervitz
• [Bioperl-l] Bio::Species validation broken   Hilmar Lapp
  • [Bioperl-l] Re: Bio::Species validation broken   Hilmar Lapp
    • [Bioperl-l] Re: Bio::Species validation broken   Steve Chervitz
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Steve Chervitz
  • [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Keith James
    • [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Jeffrey Chang
    • [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Hilmar Lapp
  • [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Matthew Pocock
• [Bioperl-l] DB_File requirement   Brian Desany
  • [Bioperl-l] DB_File requirement   Hilmar Lapp
    • [Bioperl-l] DB_File requirement   Brian Desany

Last message date: Sat Aug 31 23:57:42 2002
Archived on: Mon Sep 2 05:25:36 2002

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