[Bioperl-l] load_seqdatabase.pl and 'each_Location' method

[chris dagdigian]

I think this is the same error  I saw over the weekend when re-tooling 
my BioSQL install diary. What I found was that I needed to grab either 
bioperl-live or bioperl-db straight from the CVS repository. The current 
'official' release was throwing these types of errors.

-Chris


Dan Swan wrote:

>Hi bioperlers,
>
>I am trying to use load_seqdatabase.pl to populate a MySQL BioSQL database
>with genbank records.
>
>However I'm getting the following error:
>
>[dswan@ashtaroth scripts]$ ./load_seqdatabase.pl dantest2 dan.gb
>Reading dan.gb
>Can't locate object method "each_Location" via package
>"Bio::Location::Simple" at
>/usr/local/lib/perl5/site_perl/5.8.0/Bio/DB/BioSQL/SeqLocationAdaptor.pm
>line 247, <GEN0> line 116.
>
>The line in question is in sub store :
>
>   foreach my $loc ( $location->each_Location ) {
>
>I'm using Bioperl 1.0.2 on perl 5.6.1 and 5.8.0 and getting the same
>error.
>
>I notice there's a 'post-capetown' branch of SeqLocationAdaptor.pm
>(Revision 1.15.2.1) in which sub store is different, but I don't
>have the post-capetown branch of biosql-schema installed (I assume!).
>
>Has anyone else come across this?  I'm a bit stumped at how to proceed.
>
>Dan
>
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>  
>


-- 
Chris Dagdigian, <dag@sonsorol.org>
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