[Bioperl-l] Smith-Waterman for DNA seq in bioperl?

[Yee Man]

Folks,

	I am a programmer at the Stanford Genome Center. I was asked to
run Smith-Waterman on two DNA sequences. I am wondering if it is hard to
make the bioperl Bio::Tools:pSW works for DNA sequences as well. If it is
not that hard, I think I can write a module for DNA S-W. Please give me
pointers on how to do this.

Thanks in advance.
Yee Man

PS Sorry for the cross-post. I posted it at bioperl-guts-l but nothing
seems to be happening there...