[Bioperl-l] (no subject)

[Jason Stajich]

The Bio::Tools::EPCR is for parsing e-pcr output.  Brian has already
responded with an example file you can use.  To run it yourself,
get the e-pcr application from:
ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/

Note that there are several caveats with using e-PCR many of which I have
since forgotten.  But one is to be sure that you only use uppercase DNA
for your oligos when building the db file.

-jason

On 28 Aug 2002, theerthala sarma wrote:

> Dear Sir,
> Can u suggest me a means to get epcr extension files which I need
> to create an instance of EPCR in Bioperl.
>
> use Bio::Tools::EPCR;
> my $parser = new Bio::Tools::EPCR(-file => 'seq1.epcr');
>
> Thanks in Advance.
> Sivaram
>
>
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-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu