[Bioperl-l] swissprot under mysql

[David Guzman]

Hello:

Thanks to Chris Dagdigian and Keith Allen for the information provided in 
this list, allowing me to get to this point...

I am trying to load protein databases under MySQL, I followed up the 
indications appearing in BioTeam.Net HOWTO #1 "MyGENBANK with MySQL"
but load_seqdatabase.pl script throws me the following error message (3 
seconds later):

#./load_seqdatabase.pl -host localhost -sqldb biosqlsw -dbuser root -dbpass 
<....> -format swiss swissprot40 
/usr/site/databases/seqdb/swissprot/sprot40.dat
Reading /usr/site/databases/seqdb/swissprot/sprot40.dat
DBD::mysql::st execute failed: You have an error in your SQL syntax near ')' 
at line 1 at /usr/lib/perl2/site_perl/5.6.1/Bio/DB/SQL/SeqLocationAdaptor.pm 
line 369, <GENO> line 85.

It is a different problem than the one described by Keith Allen, I have 
already adjusted max_allowed_packet, sort_packet and record_buffer to 3M as 
suggested

Any idea???... thanks for your help


                                                      David Guzman