[Bioperl-l] Bio::Perl updates; Hmmer tests failing; Exception failing

[Ewan Birney]

I have added the functions

translate 

and

translate_as_string 

to the "functional" Bio::Perl module (ideal for newbies)



allowing people to do the following script:




use Bio::Perl;


$aa = translate_as_string("ATGTTT");

if( $aa ne 'MF' ) {
   print "Bad shit man, not the universal code\n";
} else {
   print "Rock on Met and Phe\n";
}


I am going to look more into Bio::Perl to be as useful and magically as
possible for new users.




Other points:


  (a) Hmmer tests are failing - anyone want to 'fess up to poking around
there? If not, I'll roll up my sleeves

  (b) ditto Exception

  (c) ditto RestrictionEnzyme



e.






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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
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