[Bioperl-l] genewise runnable

[Jason Stajich]

Is it possible to abstract your parsing code from the genewise runnables
(and any other -- repeatmasker?) and make them into proper Bio::Tools::XX
parsers s.t. we can use these modules in the general bioperl.  I sort of
thought we were working on the model that the runnables would only contain
code for setting up and running and exe and that they would delegate to
parsers for the processing of the output files.  This way different
parsers can be used and people can parse genewise output, etc w/o running
the apps.

-j

-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu