[Bioperl-l] RE: FTLocationFactory causes lots of test failures?

[Hilmar Lapp]

Sounds weird, and maybe the difference of warnings between your different installations is due to perl version differences.

There was, however, a minor bug in that a substitution was not disabled if the variable is undef (which may legally happen for the variable in question). I fixed this. Let me know if after a cvs update the warning messages disappear.


	-hilmar

> -----Original Message-----
> From: Wiepert, Mathieu [mailto:Wiepert.Mathieu@mayo.edu]
> Sent: Thursday, August 29, 2002 6:57 AM
> To: Hilmar Lapp
> Subject: FTLocationFactory causes lots of test failures?
> 
> 
> Hi,
> 
> I was getting alot of errors when testing my install of 
> bioperl, most having to do with this module.  I recently 
> deleted all my bioperl directories, then got them all with 
> the checkout of bioperl-all.  The first thing I am making is 
> bioperl-live.  Am I perhaps missing a dependency, or is there 
> an error condition that is not being handled in the code 
> maybe?  Not sure, I tried to run what looked like some of the 
> test failures (SeqIO, Refseq), even with verbosity set on, 
> but I didn't get the errors.  Not sure what Makefile is doing 
> differently.
> 
> 
> t/SeqFeature........ok 42/62Use of uninitialized value in 
> substitution (s///) at 
> blib/lib/Bio/Factory/FTLocationFactory.pm line 198, <GEN0> line 79.
> Use of uninitialized value in substitution (s///) at 
> blib/lib/Bio/Factory/FTLocationFactory.pm line 198, <GEN0> line 84.
> t/BioFetch_DB.......ok 2/27Use of uninitialized value in 
> substitution (s///) at Bio/Factory/FTLocationFactory.pm line 198
> 
> So, what am I doing wrong, since no one else appears to be 
> complaining?
> 
>