[Bioperl-l] Creating FASTA library.

[Jason Stajich]

Are they already in fasta/gcg format?

% cat dirname/*.fa > all.pep
% clustalw all.pep

You can of course do this with perl/bioperl if you need to convert the
formats or apply some logic to the selection of the files in the dir.

-jason
On Thu, 29 Aug 2002, Martin Hirst wrote:

> Hi,
>
> Sorry if this is a really naive question but is there a simple way of
> generating a single file from a directory of peptides suitable to input into
> clustalw?  I have only been able to find a third party application that runs
> on windows to do it (I am running the bioperl package in OSX).
>
>
> Cheers
>
> Martin
>
>
>
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-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu