[Bioperl-l] bioperl-db tests

[Shawn]

Hi,
	I'm trying to find out which version of bioperl works best with the
live version of bioperl-db. I'm trying to get make test to work. So far
I've tried bioperl-live, bioperl-1.0.2 and bioperl-0-7-2. So far the
main trunk seems to give me the least errors.

Failed Test Status Wstat Total Fail  Failed  List of Failed
--------------------------------------------------------------------------------
t/ePCRdb.t       255 65280     3    1  33.33%  3
t/map.t          255 65280     6    4  66.67%  3-6
t/marker.t       255 65280    19   15  78.95%  5-19
t/remove.t                    20    1   5.00%  9

Two main errors
one involves get_MapAdaptor not found in Bio::DB::BioSQL::DBAdaptor
while the other is a little less obvious to me :

------------- EXCEPTION  -------------
MSG: operator "replace" unrecognized by parser
STACK Bio::Factory::FTLocationFactory::from_string
/usr/users/shawnh//src/bioperl-live//Bio/Factory/FTLocationFactory.pm:159
STACK (eval)
/usr/users/shawnh//src/bioperl-live//Bio/SeqIO/FTHelper.pm:124
STACK Bio::SeqIO::FTHelper::_generic_seqfeature
/usr/users/shawnh//src/bioperl-live//Bio/SeqIO/FTHelper.pm:123
STACK Bio::SeqIO::genbank::next_seq
/usr/users/shawnh//src/bioperl-live//Bio/SeqIO/genbank.pm:298
STACK BioSQLBase::store_seq t/BioSQLBase.pm:62
STACK (eval) t/remove.t:31
STACK toplevel t/remove.t:30

basically I want to make sure the tests pass before I make any commits.

thanks,

shawn