[Bioperl-l] Re: No joins

[Hilmar Lapp]

BTW bioperl in fact does it very similarly ... although there's no 
outer_min etc. After all, we stole the location model from 
biojava ...   Even though I thought we came up with the location 
policies ourselves. Did biojava steal it back ;))

	-hilmar

On Thursday, August 15, 2002, at 11:17  AM, Brian King wrote:
>
>> Practical question - what does BioJava do with the
>> Fuzzies?
>>
>
> BioJava has a base Location class that has
> getMin()/getMax() methods to handle the simple case of
> a contiguous region.  The are sub-classes to handle
> the more complex locations, such as a FuzzyLocation.
> FuzzyLocation takes outerMin, outerMax, innerMin,
> innerMax,  isMinFuzzy, isMaxFuzzy arguments in the
> constructor.  There is a default policy that tells how
> the fuzzy ends get interpreted in getMin()/getMax(),
> and the policy is settable.  So for any location you
> can deal with a simple range, or request all the gory
> detail.  It's complicated, but true to the input data.
>
> Regards,
> Brian
>
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--
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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