[Bioperl-l] primer3, SeqIO::primer3, PrimedSeq, and SeqFeature::Primer

[Hilmar Lapp]

I had actually favored Bio::SeqIO since it does contain a series of 
sequences in an abstract sense (namely those for which the primers 
were designed), but under Bio::Tools may indeed be better since it's 
not a generally used sequence format per se. Directory 
Bio::Tools::Primer?

	-hilmar

On Friday, August 9, 2002, at 07:53  PM, Elia Stupka wrote:

>> What do you feel are the guidelines for placing things in SeqIO? In my
>> opinion, the input belongs there because it takes a file and returns
>> sequences.
>
> I thought that as part of the move to bioperl-run,etc. we had 
> agreed that
> all the parsers for program outputs go into Bio/Tools (within 
> bioperl-live
> cvs module) and all the modules that actually run the programs go into
> Bio/Tools/Run (within the bioperl-run cvs module)
>
> Elia
>
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--
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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