[Bioperl-l] get_stream_by_batch with an invalid ac

[Lincoln Stein]

Batch Entrez is deprecated by NCBI and is slated to go away at the end of the 
year.  For now, you can use Boulder::Genbank, which goes directly to batch 
entrez.  However, Boulder::Genbank is deprecated for the same reason!

Lincoln

On Wednesday 07 August 2002 08:51 am, michael wrote:
> On Wed, 7 Aug 2002, Mick Watson wrote:
> > This isn't a bioperl problem, it's an issue with the NCBI.  All bioperl
> > does is provide the ability to query the NCBI, and therefore bioperl's
> > behaviour will be exactly the same as the NCBI's
> >
> > If you go to http://www.ncbi.nlm.nih.gov/ and enter "AC013798 AC013798
> > AC021953 ZZ99999" into the query box at the top, and press Go then you
> > will see that the query returns no results.  If you remove the ZZ99999
> > from the list then the NCBI will return the results.
>
> 	Ah I see....  Batch Entrez works on the list
> <http://www.ncbi.nlm.nih.gov/entrez/batchentrez.cgi?db=Nucleotide>
> is there any way I can point bioperl at that or am I reduced to LWP?
>
>
>
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Michael John Lush PhD		 	 Tel:44-20-7679-5027
> Nomenclature Bioinformatics Support 	 Fax:44-20-7387-3496
> HUGO Gene Nomenclature Committee Email:  nome@galton.ucl.ac.uk
> The Galton Laboratory
> University College London, UK
> URL: http://www.gene.ucl.ac.uk/nomenclature/
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-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
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