March 2003 Archives by author

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...

Starting: Sat Mar 1 12:08:28 EDT 2003
Ending: Mon Mar 31 23:24:28 EDT 2003
Messages: 412

• [Bioperl-l] Query Unigene title from input a ACC number / BioPerl Object Creation   Jamie Hatfield (AGCoL)
• [Bioperl-l] Query Unigene title from input a ACC number / BioPerl Object Creation   Jamie Hatfield (AGCoL)
• [Bioperl-l] Philosophy, BioPerl Object Creation [was Query Unigene title from input a ACC number]   Jamie Hatfield (AGCoL)
• [Bioperl-l] Philosophy, BioPerl Object Creation [was QueryUnigene title from input a ACC number]   Jamie Hatfield (AGCoL)
• [Bioperl-l] GenericResult.pm and HMMERResult.pm question   Diane Benz (CCGB)
• [Bioperl-l] Extracting domain# from hmmpfam output   Diane Benz (CCGB)
• [BioSQL-l] Re: [Bioperl-l] parent <-> subject etc   Matthew Pocock
• [Bioperl-l] Philosophy, BioPerl Object Creation   Matthew Pocock
• [Bioperl-l] common ancestor for ontology terms   Matthew Pocock
• [Bioperl-l] predicting secondary structure   Richard Adams
• [Bioperl-l] Different versions of biosql schema and bioperl-db   Zayed Albertyn
• [Bioperl-l] Bioperl module for upstream/downstream genes ?   Charles Alexander
• [Bioperl-l] Bioperl module for upstream/downstream genes ?   Charles A. Alexander
• [Bioperl-l] issue with closing tempfile and bl2seq   Samuel Andersson
• [Bioperl-l] issue with closing tempfile and bl2seq   BHurwitz at twt.com
• [Bioperl-l] issue with closing tempfile and bl2seq   BHurwitz at twt.com
• [Bioperl-l] issue with closing tempfile and bl2seq   BHurwitz at twt.com
• [Bioperl-l] Re: [BioSQL-l] towards schema freeze   Yves Bastide
• [BioSQL-l] Re: [Bioperl-l] Error in loading into biosql database   Yves Bastide
• [Bioperl-l] problem unigene parsing   Siddhartha Basu
• [Bioperl-l] problem unigene parsing   Siddhartha Basu
• [Bioperl-l] problem unigene parsing   Siddhartha Basu
• [Bioperl-l] Error in loading into biosql database   Siddhartha Basu
• [Bioperl-l] Error in loading into biosql database   Siddhartha Basu
• [Bioperl-l] Error in loading into biosql database   Siddhartha Basu
• [Bioperl-l] Error in loading into biosql database   Siddhartha Basu
• [Bioperl-l] is dev.open-bio.org still the CVS server?   Benjamin Berman
• [Bioperl-l] is dev.open-bio.org still the CVS server?   Benjamin Berman
• [Bioperl-l] Bio::Graphics::Panel can't locate object method 'start'...   Benjamin Berman
• [Bioperl-l] SeqIO out of memory   Ewan Birney
• [Bioperl-l] SeqIO out of memory   Ewan Birney
• [Bioperl-l] Bio::Graphics::Panel can't locate object method 'start'...   Ewan Birney
• [Bioperl-l] SeqIO out of memory   Ewan Birney
• [Bioperl-l] Fwd: Exception.t is still failing miserably   Ewan Birney
• [Bioperl-l] issue with closing tempfile and bl2seq   Ewan Birney
• [Bioperl-l] issue with closing tempfile and bl2seq   Ewan Birney
• [Bioperl-l] Dazed and Confused for 1.2.1   Ewan Birney
• [Bioperl-l] problem unigene parsing   Ewan Birney
• [Bioperl-l] Is there a parser for "seq_contig.md"?   Ewan Birney
• [Bioperl-l] Exception.t still fails   Ewan Birney
• [Bioperl-l] Re: Proposed bioperl submission   Ewan Birney
• [Bioperl-l] $hsp->query->strand   Ewan Birney
• [Bioperl-l] Bioperl stability   Ewan Birney
• [Bioperl-l] Ontology overhaul: migration to branch imminent   Ewan Birney
• [Bioperl-l] all tests pass!   Ewan Birney
• [Bioperl-l] Annotations and annotation tags can be Ontology Terms   Ewan Birney
• [Bioperl-l] Bioperl + Oracle 8i Database   Ewan Birney
• [Bioperl-l] Bioperl + Oracle 8i Database   Ewan Birney
• [Bioperl-l] bpindex/bpfetch work for me:   Ewan Birney
• [Bioperl-l] cigar string in GenericHSP   Ewan Birney
• [Bioperl-l] Re-organized ontology modules are in the branch   Ewan Birney
• [Bioperl-l] more on the bl2seq error   Ewan Birney
• [Bioperl-l] 1.2.1 rc1   Ewan Birney
• [Bioperl-l] RelationshipI has no distance   Ewan Birney
• [Bioperl-l] Re: [BioSQL-l] towards schema freeze   Ewan Birney
• [Bioperl-l] parent <-> subject etc   Ewan Birney
• [Bioperl-l] Bioperl module for upstream/downstream genes ?   Ewan Birney
• [Bioperl-l] Query Unigene title from input a ACC number / BioPerl Object Creation   Ewan Birney
• [Bioperl-l] Bio::Search::XXX::GenericXXX vs. Bio::Search::XXX::BlastXXX   Ewan Birney
• [Bioperl-l] bioperl-1.2.1 - Release Candidiate 2   Ewan Birney
• [Bioperl-l] bioperl-1.2.1 - Release Candidiate 2   Ewan Birney
• [Bioperl-l] bioperl-1.2.1 - Release Candidiate 2   Ewan Birney
• [Bioperl-l] 1.2.1 released   Ewan Birney
• [Bioperl-l] BioGraphics problem   Ewan Birney
• [Bioperl-l] Boxes and features...   William Boileau
• [Bioperl-l] Boxes and features...   William Boileau
• Fwd: Re: [Bioperl-l] Boxes and features...   William Boileau
• [Bioperl-l] getting upstream regions   Josh Burdick
• [Bioperl-l] dev.open-bio.org down?   Scott Cain
• [Bioperl-l] bl2seq memory problem?   Steven Cannon
• [Bioperl-l] more on the bl2seq error   Steven Cannon
• [Bioperl-l] Using SeqIO   Brian Carlson
• [Bioperl-l] Using SeqIO   Brian Carlson
• [Bioperl-l] parsing blast result: how to get query info?   Jack Chen
• [Bioperl-l] parsing blast result: how to get query info?   Jack Chen
• [Bioperl-l] handling GFF format   Jack Chen
• [Bioperl-l] Fwd: Exception.t is still failing miserably   Steve Chervitz
• [Bioperl-l] Re: Exception.t still fails   Steve Chervitz
• [Bioperl-l] SearchIO question   Steve Chervitz
• [Bioperl-l] Bio::Search::XXX::GenericXXX vs. Bio::Search::XXX::BlastXXX   Steve Chervitz
• [Bioperl-l] Is there a parser for "seq_contig.md"?   Sang Chul Choi
• [Bioperl-l] using BioPerl.ppd with ActiveState   Kevin Clancy
• [Bioperl-l] using BioPerl.ppd with ActiveState   Kevin Clancy
• [NORDNS] RE: [Bioperl-l] using BioPerl.ppd with ActiveState   Kevin Clancy
• [Bioperl-l] error with files containing multiple BSML formatted entries   Kevin Clancy
• [Bioperl-l] RE: Bioperl-l Digest, Vol 3, Issue 45   Clancy, Kevin
• [Bioperl-l] 1.2.1 rc1   Chris Dagdigian
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Allen Day
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Allen Day
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Allen Day
• [Bioperl-l] Is there a way to manually install Bundle::BioPerl   John Dayton
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary   Richard Durbin
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary - NOW not NOT   Richard Durbin
• [Bioperl-l] Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer   Rob Edwards
• [Bioperl-l] hackers guide   Rob Edwards
• [Bioperl-l] Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer   Rob Edwards
• [Bioperl-l] bioperl-1.2.1 - Release Candidiate 2   Rob Edwards
• [Bioperl-l] Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer   Rob Edwards
• [Bioperl-l] SearchIO question   Shin Enomoto
• [Bioperl-l] SearchIO question   Shin Enomoto
• [Bioperl-l] SearchIO question   Shin Enomoto
• [Bioperl-l] about the iupac   Magic Fang
• [Bioperl-l] how to translate a codon to 3 letters aa code?   Magic Fang
• [Bioperl-l] how to translate a codon to 3 letters aa code?   Magic Fang
• [Bioperl-l] cigar string in GenericHSP   Bob Freeman
• [Bioperl-l] bioperl-1.2.1 - Release Candidiate 2   Bob Freeman
• [Bioperl-l] Re:Bio::Species Bug/question   James Gilbert
• [Bioperl-l] Philosophy, BioPerl Object Creation [was Query Unigene title from input a ACC number]   James Gilbert
• [Bioperl-l] Panel.pm   Christian Greggio
• [Bioperl-l] Assembling scaffold-specific est contigs (blat)   Charles Hauser
• [Bioperl-l] parsing sim4 results   Charles Hauser
• [Bioperl-l] gff -> gene, or exonerate ->gene?   Charles Hauser
• [Bioperl-l] primer3 module help   Matthew Hill
• [Bioperl-l] problem installing Bioperl   Dave Howorth
• [Bioperl-l] BioGraphics problem   Andrew M. Hynes
• [Bioperl-l] Proposed submission: tools for designing RNAi oligos   Donald G. Jackson
• [Bioperl-l] Re: Proposed bioperl submission   Donald G. Jackson
• [Bioperl-l] WARNING INCOMING: collection consolidation   Donald G. Jackson
• [Bioperl-l] Bio::Tools::Run::Genewise and HMMs   Keith James
• [Bioperl-l] Bio::SeqFeature::Gene fixes   Keith James
• [Bioperl-l] Automatic replication of databases and modules   Lars G. T. Jorgensen
• [Bioperl-l] Scandinavian Perl Workshop   Lars G. T. Jorgensen
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary   Jim Kent
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary - NOW not NOT   Jim Kent
• [Bioperl-l] bond() operator   Hilmar Lapp
• [Bioperl-l] Exception.t is still failing miserably   Hilmar Lapp
• [Bioperl-l] Fwd: Exception.t is still failing miserably   Hilmar Lapp
• [Bioperl-l] Bio::Ontology & Bio::OntologyIO   Hilmar Lapp
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Hilmar Lapp
• [Bioperl-l] problem unigene parsing   Hilmar Lapp
• [Bioperl-l] problem unigene parsing   Hilmar Lapp
• [Bioperl-l] Bio::Ontology & Bio::OntologyIO   Hilmar Lapp
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Hilmar Lapp
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Hilmar Lapp
• [Bioperl-l] Bio::Ontology & Bio::OntologyIO   Hilmar Lapp
• [Bioperl-l] Is there a parser for "seq_contig.md"?   Hilmar Lapp
• [Bioperl-l] Bio::DB::Taxonomy HTTPget query problem   Hilmar Lapp
• [Bioperl-l] BioFetch_DB.t fails 4 tests   Hilmar Lapp
• [Bioperl-l] Exception.t still fails   Hilmar Lapp
• [Bioperl-l] Bio::DB::Taxonomy HTTPget query problem   Hilmar Lapp
• [Bioperl-l] Re: Exception.t still fails   Hilmar Lapp
• [Bioperl-l] bond() operator   Hilmar Lapp
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Hilmar Lapp
• [Bioperl-l] Automatic replication of databases and modules   Hilmar Lapp
• [Bioperl-l] BioFetch_DB.t fails 4 tests   Hilmar Lapp
• [Bioperl-l] Ontology overhaul: migration to branch imminent   Hilmar Lapp
• [Bioperl-l] all tests pass!   Hilmar Lapp
• [Bioperl-l] Annotations and annotation tags can be Ontology Terms   Hilmar Lapp
• [Bioperl-l] script installation   Hilmar Lapp
• [Bioperl-l] Annotations and annotation tags can be Ontology Terms   Hilmar Lapp
• [Bioperl-l] Re-organized ontology modules are in the branch   Hilmar Lapp
• [Bioperl-l] Using SeqIO   Hilmar Lapp
• [Bioperl-l] Summary about ontologies in bioperl   Hilmar Lapp
• [Bioperl-l] Re:Bio::Species Bug/question   Hilmar Lapp
• [Bioperl-l] Error in loading into biosql database   Hilmar Lapp
• [Bioperl-l] Error in loading into biosql database   Hilmar Lapp
• [Bioperl-l] bioperl-db works against the biosql HEAD   Hilmar Lapp
• [Bioperl-l] RelationshipI has no distance   Hilmar Lapp
• [Bioperl-l] parent <-> subject etc   Hilmar Lapp
• [Bioperl-l] Error in loading into biosql database   Hilmar Lapp
• [Bioperl-l] parent <-> subject etc   Hilmar Lapp
• [Bioperl-l] Error in loading into biosql database   Hilmar Lapp
• [Bioperl-l] Re: [BioSQL-l] towards schema freeze   Hilmar Lapp
• [Bioperl-l] make biodesign.pod and bioperl.pod fails   Hilmar Lapp
• [Bioperl-l] make biodesign.pod and bioperl.pod fails   Hilmar Lapp
• [Bioperl-l] parent <-> subject etc   Hilmar Lapp
• [Bioperl-l] Fwd: [GMOD-devel] GO::TermFinder Announcement   Hilmar Lapp
• [Bioperl-l] parent <-> subject etc   Hilmar Lapp
• [Bioperl-l] parent <-> subject etc   Hilmar Lapp
• [Bioperl-l] parent <-> subject etc   Hilmar Lapp
• [Bioperl-l] Error in loading into biosql database   Hilmar Lapp
• [Bioperl-l] Error in loading into biosql database   Hilmar Lapp
• [Bioperl-l] Philosophy, BioPerl Object Creation [was Query Unigene title from input a ACC number]   Hilmar Lapp
• [Bioperl-l] Philosophy, BioPerl Object Creation   Hilmar Lapp
• [Bioperl-l] Philosophy, BioPerl Object Creation   Hilmar Lapp
• [Bioperl-l] Philosophy, BioPerl Object Creation   Hilmar Lapp
• [Bioperl-l] bioperl-db & biperl version   Hilmar Lapp
• [Bioperl-l] parent <-> subject etc   Hilmar Lapp
• [Bioperl-l] common ancestor for ontology terms   Hilmar Lapp
• [Bioperl-l] Different versions of biosql schema and bioperl-db   Hilmar Lapp
• [Bioperl-l] Fwd: Exception.t is still failing miserably   Heikki Lehvaslaiho
• [Bioperl-l] bond() operator   Heikki Lehvaslaiho
• [Bioperl-l] BioFetch_DB.t fails 4 tests   Heikki Lehvaslaiho
• [Bioperl-l] BioFetch_DB.t fails 4 tests   Heikki Lehvaslaiho
• [Bioperl-l] BioFetch_DB.t fails 4 tests   Heikki Lehvaslaiho
• [Bioperl-l] Possibility of a developer being able to talk on Bioperl at a Bioinformatics specific Perl course   Heikki Lehvaslaiho
• [Bioperl-l] script installation   Heikki Lehvaslaiho
• [Bioperl-l] Re:Bio::Species Bug/question   Heikki Lehvaslaiho
• [Bioperl-l] Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer   Heikki Lehvaslaiho
• [Bioperl-l] use warnings   Heikki Lehvaslaiho
• [Bioperl-l] Philosophy, BioPerl Object Creation   Heikki Lehvaslaiho
• [Bioperl-l] Philosophy, BioPerl Object Creation   Heikki Lehvaslaiho
• [Bioperl-l] bioperl-1.2.1 - Release Candidiate 2   Heikki Lehvaslaiho
• [Bioperl-l] {SPECS] Sequence meta data   Heikki Lehvaslaiho
• [Bioperl-l] bioperl-1.2.1 - Release Candidiate 2   Heikki Lehvaslaiho
• [Bioperl-l] {SPECS] Sequence meta data   Heikki Lehvaslaiho
• [Bioperl-l] general Analysis client added   Catherine Letondal
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary   Suzanna Lewis
• [Bioperl-l] SeqIO out of memory   Marc Logghe
• [Bioperl-l] parsing blast result: how to get query info?   Marc Logghe
• [Bioperl-l] cigar string in GenericHSP   Marc Logghe
• [Bioperl-l] cigar string in GenericHSP   Marc Logghe
• [Bioperl-l] how to translate a codon to 3 letters aa code?   Marc Logghe
• [Bioperl-l] how to translate a codon to 3 letters aa code?   Marc Logghe
• [Bioperl-l] RE: [Gmod-gbrowse] Some minor bugs/observations   Marc Logghe
• [Bioperl-l] RE: [Gmod-gbrowse] Some minor bugs/observations   Marc Logghe
• [Bioperl-l] Bioperl stability   Luc.Gauthier at aventis.com
• [Bioperl-l] Bio::Tools::Run::StandAloneBlast   Luc.Gauthier at aventis.com
• [Bioperl-l] Bio::Search::XXX::GenericXXX vs. Bio::Search::XXX::BlastXXX   Luc.Gauthier at aventis.com
• [Bioperl-l] problem unigene parsing   Andrew Macgregor
• [Bioperl-l] problem unigene parsing   Andrew Macgregor
• [Bioperl-l] Query Unigene title from input a ACC number   Andrew Macgregor
• [Bioperl-l] SeqIO out of memory   Aaron J Mackey
• [Bioperl-l] Bioperl List Summary - January 2003   Aaron J Mackey
• [Bioperl-l] Re: Added Phil Green's Smith-Waterman to my module   Aaron J Mackey
• [Bioperl-l] Re: Added Phil Green's Smith-Waterman to my module   Aaron J Mackey
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Aaron J Mackey
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Aaron J Mackey
• [Bioperl-l] Bio::DB::Taxonomy HTTPget query problem   Aaron J Mackey
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Aaron J Mackey
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Aaron J Mackey
• [Bioperl-l] Bio::Root::Version functionality is in.   Aaron J Mackey
• [Bioperl-l] Bio::Root::Version functionality is in.   Aaron J Mackey
• [Bioperl-l] BioFetch_DB.t fails 4 tests   Aaron J Mackey
• [Bioperl-l] BioFetch_DB.t fails 4 tests   Aaron J Mackey
• [Bioperl-l] Bio::Root::Version functionality is in.   Aaron J Mackey
• [Bioperl-l] script installation   Aaron J Mackey
• [Bioperl-l] script installation   Aaron J Mackey
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Aaron J Mackey
• [Bioperl-l] Re: undef   Aaron J Mackey
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl commit   Aaron J Mackey
• [Bioperl-l] RE: [Bioperl-guts-l] bioperl commit   Aaron J Mackey
• [Bioperl-l] parent <-> subject etc   Aaron J Mackey
• [Bioperl-l] Error in loading into biosql database   Aaron J Mackey
• [Bioperl-l] use warnings   Aaron J Mackey
• [Bioperl-l] Added Phil Green's Smith-Waterman to my module   Yee Man
• [Bioperl-l] Re: Added Phil Green's Smith-Waterman to my module   Yee Man
• [Bioperl-l] Re: Added Phil Green's Smith-Waterman to my module   Yee Man
• [Bioperl-l] Re: Added Phil Green's Smith-Waterman to my module   Yee Man
• [Bioperl-l] introducing news.open-bio.org and new Bioperl news system   Peter Masiar
• [Bioperl-l] April fools prank   Mike
• [Bioperl-l] RelationshipI has no distance   Chris Mungall
• [Bioperl-l] parent <-> subject etc   Chris Mungall
• [Bioperl-l] parent <-> subject etc   Chris Mungall
• [Bioperl-l] parent <-> subject etc   Chris Mungall
• [Bioperl-l] parent <-> subject etc   Chris Mungall
• [Bioperl-l] parent <-> subject etc   Chris Mungall
• [Bioperl-l] common ancestor for ontology terms   Chris Mungall
• [Bioperl-l] unaligned sequences breaks hqd analysis   Andy Nunberg
• [Bioperl-l] Tracking database dates in BLAST   Andy Nunberg
• [Bioperl-l] SeqIO out of memory   Brian Osborne
• [Bioperl-l] SeqIO out of memory   Brian Osborne
• [Bioperl-l] SeqIO out of memory   Brian Osborne
• [Bioperl-l] Fwd: Exception.t is still failing miserably   Brian Osborne
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Brian Osborne
• [Bioperl-l] about the iupac   Brian Osborne
• [Bioperl-l] SearchIO question   Brian Osborne
• [Bioperl-l] bond() operator   Brian Osborne
• [Bioperl-l] bug #1396: *.PL to *.pod conversion is broken, makebailsout   Brian Osborne
• [Bioperl-l] SearchIO question   Brian Osborne
• [Bioperl-l] Bio::Root::Version functionality is in.   Brian Osborne
• [Bioperl-l] Bio::Root::Version functionality is in.   Brian Osborne
• [Bioperl-l] using BioPerl.ppd with ActiveState   Brian Osborne
• [Bioperl-l] Bio::Root::Version functionality is in.   Brian Osborne
• [NORDNS] RE: [Bioperl-l] using BioPerl.ppd with ActiveState   Brian Osborne
• [NORDNS] RE: [Bioperl-l] using BioPerl.ppd with ActiveState   Brian Osborne
• [Bioperl-l] script installation   Brian Osborne
• [Bioperl-l] script installation   Brian Osborne
• [Bioperl-l] bpindex/bpfetch work for me:   Brian Osborne
• [Bioperl-l] Primer design?   Brian Osborne
• [Bioperl-l] Bug 1386   Brian Osborne
• [Bioperl-l] Note to Bundle maintainer   Brian Osborne
• [Bioperl-l] Bug 1386   Brian Osborne
• [Bioperl-l] RE: [Bioperl-guts-l] bioperl commit   Brian Osborne
• [Bioperl-l] undef   Brian Osborne
• [Bioperl-l] RE: [Bioperl-guts-l] bioperl commit   Brian Osborne
• [Bioperl-l] Using SeqIO   Brian Osborne
• [Bioperl-l] Installation error, please help!   Brian Osborne
• [Bioperl-l] GenericResult.pm and HMMERResult.pm question   Brian Osborne
• [Bioperl-l] parsing sim4 results   Brian Osborne
• [Bioperl-l] Bio::SearchIO::Writer::HSPTableWriter arguments   Brian Osborne
• [Bioperl-l] Tracking database dates in BLAST   Brian Osborne
• [Bioperl-l] Question regarding NR database   Brian Osborne
• [Bioperl-l] RE: Bioperl-l Digest, Vol 3, Issue 45   Brian Osborne
• [Bioperl-l] transcribe...   Brian Osborne
• [Bioperl-l] RE: [Gmod-gbrowse] Some minor bugs/observations   Brian Osborne
• [Bioperl-l] Fwd: [Contrib-Rpm] perl-Bioperl-1.2-1mdk   Guillaume Rousse
• [Bioperl-l] Is there any data model available for systematics classes ?   Guillaume Rousse
• [Bioperl-l] Summary about ontologies in bioperl   Guillaume Rousse
• [Bioperl-l] Is there any data model available for systematics classes ?   Guillaume Rousse
• [Bioperl-l] StandAloneBlast & SeqIO very strange stream   Remo Sanges
• [Bioperl-l] Bio::SearchIO::Writer::HSPTableWriter arguments   Remo Sanges
• [Bioperl-l] Bio::SearchIO::Writer::HSPTableWriter arguments   Remo Sanges
• [Bioperl-l] about query in GenBank   Remo Sanges
• [Bioperl-l] bl2seq and SearchIO   Peter Schattner
• [Bioperl-l] {SPECS] Sequence meta data   Peter Schattner
• [Bioperl-l] general Analysis client added   Martin Senger
• [Bioperl-l] general Analysis client added   Martin Senger
• [Bioperl-l] RE: Bioperl for ppm3   Nigam Shah
• [Bioperl-l] Windows PPM3 archive for Bioperl 1.2   Nigam Shah
• [Bioperl-l] parsing blast result: how to get query info?   Prachi Shah
• [Bioperl-l] Bug 1386   Prachi Shah
• [Bioperl-l] unaligned sequences breaks hqd analysis   Robson Francisco de Souza
• [Bioperl-l] {SPECS] Sequence meta data   Robson Francisco de Souza
• [Bioperl-l] SeqIO out of memory   Jason Stajich
• [Bioperl-l] Project Ideas: RemoteBlast extension   Jason Stajich
• [Bioperl-l] Removing seq from SimpleAlign   Jason Stajich
• [Bioperl-l] parsing blast result: how to get query info?   Jason Stajich
• [Bioperl-l] Bio::Tools::Run::Genewise and HMMs   Jason Stajich
• [Bioperl-l] dev.open-bio.org down?   Jason Stajich
• [Bioperl-l] SearchIO question   Jason Stajich
• [Bioperl-l] SearchIO question   Jason Stajich
• [Bioperl-l] using BioPerl.ppd with ActiveState   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] [RFC] Module names (fwd)   Jason Stajich
• [Bioperl-l] script installation   Jason Stajich
• [Bioperl-l] cigar string in GenericHSP   Jason Stajich
• [Bioperl-l] cigar string in GenericHSP   Jason Stajich
• [Bioperl-l] cigar string in GenericHSP   Jason Stajich
• [Bioperl-l] cigar string in GenericHSP   Jason Stajich
• [Bioperl-l] RE: [Bioperl-guts-l] bioperl commit   Jason Stajich
• [Bioperl-l] Is there any data model available for systematics classes ?   Jason Stajich
• [Bioperl-l] GenericResult.pm and HMMERResult.pm question   Jason Stajich
• [Bioperl-l] parsing sim4 results   Jason Stajich
• [Bioperl-l] StandAloneBlast & SeqIO very strange stream   Jason Stajich
• [Bioperl-l] Extracting domain# from hmmpfam output   Jason Stajich
• [Bioperl-l] Bio::SearchIO::Writer::HSPTableWriter arguments   Jason Stajich
• [Bioperl-l] Tracking database dates in BLAST   Jason Stajich
• [Bioperl-l] Question regarding NR database   Jason Stajich
• [Bioperl-l] problem installing Bioperl   Jason Stajich
• [Bioperl-l] Is there a way to manually install Bundle::BioPerl   Jason Stajich
• [Bioperl-l] Query Unigene title from input a ACC number / BioPerl Object Creation   Jason Stajich
• [Bioperl-l] Philosophy, BioPerl Object Creation [was Query Unigene title from input a ACC number]   Jason Stajich
• [Bioperl-l] handling GFF format   Jason Stajich
• [Bioperl-l] Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer   Jason Stajich
• [Bioperl-l] Bio::Search::XXX::GenericXXX vs. Bio::Search::XXX::BlastXXX   Jason Stajich
• [Bioperl-l] bioperl-1.2.1 - Release Candidiate 2   Jason Stajich
• [Bioperl-l] [cpan #667] Make Maker with LARGE module list (fwd)   Jason Stajich
• [Bioperl-l] Bio::Graphics::Panel can't locate object method 'start'...   Lincoln Stein
• [Bioperl-l] Boxes and features...   Lincoln Stein
• [Bioperl-l] Re: [SO-devel] Re: GFF3 preliminary   Lincoln Stein
• [Bioperl-l] Bio::Ontology & Bio::OntologyIO   Lincoln Stein
• [Bioperl-l] getting upstream regions   Lincoln Stein
• [Bioperl-l] Dazed and Confused for 1.2.1   Lincoln Stein
• [Bioperl-l] dev.open-bio.org down?   Lincoln Stein
• [Bioperl-l] Boxes and features...   Lincoln Stein
• Fwd: Re: [Bioperl-l] Boxes and features...   Lincoln Stein
• [Bioperl-l] Bio::DB::GFF dna doesn't work   Lincoln Stein
• [Bioperl-l] Bio::Graphics::Panel can't locate object method 'start'...   Lincoln Stein
• [Bioperl-l] Panel.pm   Lincoln Stein
• [Bioperl-l] script installation   Lincoln Stein
• [Bioperl-l] Re: BioPerl GFF scripts   Lincoln Stein
• [Bioperl-l] Bio::Graphics::Panel can't locate object method 'start'...   Lincoln Stein
• [Bioperl-l] error with files containing multiple BSML formatted entries   Lincoln Stein
• [Bioperl-l] Fascinating bug...   Lincoln Stein
• [Bioperl-l] parent <-> subject etc   Lincoln Stein
• [Bioperl-l] Fwd: [GMOD-devel] GO::TermFinder Announcement   Lincoln Stein
• [Bioperl-l] gff -> gene, or exonerate ->gene?   Lincoln Stein
• [Bioperl-l] Re: Need help   Lincoln Stein
• [Bioperl-l] RE: [Gmod-gbrowse] Some minor bugs/observations   Lincoln Stein
• [Bioperl-l] BioGraphics problem   Lincoln Stein
• [Bioperl-l] bioperl-1.2.1 - Release Candidiate 2   Lincoln Stein
• [Bioperl-l] predicting secondary structure   Elia Stupka
• [Bioperl-l] introducing news.open-bio.org and new Bioperl news system   Elia Stupka
• [Bioperl-l] BioFetch_DB tests   Elia Stupka
• [Bioperl-l] BioFetch_DB.t fails 4 tests   Elia Stupka
• [Bioperl-l] Bioperl + Oracle 8i Database   Elia Stupka
• [Bioperl-l] BioFetch_DB.t fails 4 tests   Elia Stupka
• [Bioperl-l] $hsp->query->strand   Elia Stupka
• [Bioperl-l] cigar string in GenericHSP   Elia Stupka
• [Bioperl-l] Bio:Tools::Primer3, Bio::Seq::PrimedSeq, and Bio::SeqFeature::Primer   Elia Stupka
• [Bioperl-l] Possibility of a developer being able to talk on Bioperl at a Bioinformatics specific Perl course   Dr Dan Swan
• [Bioperl-l] Bio::Tools::Run::StandAloneBlast   Qiang TU
• [Bioperl-l] IdentifiableI and LSIDs: towards a better future   Gudmundur Arni Thorisson
• [Bioperl-l] Bio::DB::GFF dna doesn't work   Philippe Vaglio
• [Bioperl-l] transcribe...   Vasudevan, Geetha
• [Bioperl-l] Bio::Graphics::Panel can't locate object method 'start'...   Matthew Vaughn
• [Bioperl-l] Fascinating bug...   Matthew Vaughn
• [Bioperl-l] getting upstream regions   Mark Wagner
• [Bioperl-l] Using bioperl to blast against "Homo sapiens genomic contig sequences," not nr   Mark Wagner
• [Bioperl-l] Question regarding NR database   Kerr Wall
• [Bioperl-l] Primer design?   Jun Wan
• [Bioperl-l] linking of LL to SP   Stephen Wang
• [Bioperl-l] Link GenBank to LocusLink   Stephen Wang
• [Bioperl-l] parsing blast result: how to get query info?   James Wasmuth
• [Bioperl-l] Removing seq from SimpleAlign   James Wasmuth
• [Bioperl-l] parsing blast result: how to get query info?   James Wasmuth
• [Bioperl-l] Bio::Tools::Run::StandAloneBlast   James Wasmuth
• [Bioperl-l] bl2seq and SearchIO   Wiepert, Mathieu
• [Bioperl-l] Using bioperl to blast against "Homo sapiens genomiccontig sequences," not nr   Wiepert, Mathieu
• [Bioperl-l] bpindex/bpfetch work for me:   Wiepert, Mathieu
• [Bioperl-l] Tracking database dates in BLAST   Wiepert, Mathieu
• [Bioperl-l] Tracking database dates in BLAST   Wiepert, Mathieu
• [Bioperl-l] How to install CPAN's modules needed by BioPerl   Wiepert, Mathieu
• [Bioperl-l]   Brian Wilhelm
• [Bioperl-l] Ignore previous message, issue already raised!   Brian Wilhelm
• [Bioperl-l] (no subject)   Willem van Wyk
• [Bioperl-l] EnsEMBL-Bioperl converters proposal   Juguang Xiao
• [Bioperl-l] $hsp->query->strand   Juguang Xiao
• [Bioperl-l] $hsp->query->strand   Juguang Xiao
• [Bioperl-l] cigar string in GenericHSP   Juguang Xiao
• [Bioperl-l] about query in GenBank   Yanan Yu
• [Bioperl-l] help find new dependencies to list in Bundle::Bioperl   chris dagdigian
• [Bioperl-l] bioperl-1.2.1 - Release Candidiate 2   chris dagdigian
• [Bioperl-l] Installation error, please help!   darson
• [Bioperl-l] Query Unigene title from input a ACC number   darson
• [Bioperl-l] bioperl-db & biperl version   dugas at mediagen.fr
• [Bioperl-l] Different versions of biosql schema and bioperl-db   dugas at mediagen.fr
• [Bioperl-l] Different versions of biosql schema and bioperl-db   dugas at mediagen.fr
• [Bioperl-l] about the iupac - It works...   hanfos
• [Bioperl-l] Bioperl + Oracle 8i Database   adam jordan
• [Bioperl-l] How to install CPAN's modules needed by BioPerl   ying lin
• [Bioperl-l] Ignore my latest message.Issue raised.   ying lin

Last message date: Mon Mar 31 23:24:28 EDT 2003
Archived on: Tue Apr 1 00:25:00 EDT 2003

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...