[Bioperl-l] issue with closing tempfile and bl2seq

[BHurwitz at twt.com]

Hi Ewan,

I hate to say it...but I am still having problems with tempfiles not
closing properly when running bl2seq in StandAloneBlast.pm (even after
adding in the WrapperBase.pm module).  I get a new error, but the same
basic concept.  Too many open files... Any ideas?

-Bonnie

Error in tempfile() using /tmp/XXXXXXXXXX: Could not create temp file
/tmp/uIUPLezeBx: Too many open files at
/usr/lib/perl5/site_perl/5.6.1/Bio/Root/IO.pm line 614




|---------+----------------------------->
|         |           Ewan Birney       |
|         |           <birney at ebi.ac.uk>|
|         |           Sent by:          |
|         |           bioperl-l-bounces@|
|         |           bioperl.org       |
|         |                             |
|         |                             |
|         |           03/05/2003 03:29  |
|         |           PM                |
|         |                             |
|---------+----------------------------->
  >----------------------------------------------------------------------------------------------------------------------------------------------|
  |                                                                                                                                              |
  |        To:      BHurwitz at twt.com                                                                                                             |
  |        cc:      bioperl-l at bioperl.org                                                                                                        |
  |        Subject: Re: [Bioperl-l] issue with closing tempfile and bl2seq                                                                       |
  >----------------------------------------------------------------------------------------------------------------------------------------------|




On Wed, 5 Mar 2003 BHurwitz at twt.com wrote:

>
> Hi Ewan,
>
> Thanks so much for the response.  I updated bioperl to 1.2 and
> unpacked/installed bioperl-run from the bioperl CVS, but it looks like I
am
> still missing the WrapperBase.pm module.  Do you know where I can get
this?
> Is there something I missed?


there is wrapperbase.pm on the web site at:

http://bio.perl.org/SRC/branch-1-2/Bio/Tools/Run/WrapperBase.pm



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